JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZBTB26_chr9_122910566_122936512	1/1	a0001	441	348	87	67	150	10	32	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	a0002	441	5	0	0	5	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	a0003	441	4	3	1	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	a0004	441	1	0	0	1	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB2_chr6_151359115_151396559	1/1	a0001	514	388	88	74	166	16	42	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB32_chr19_35699558_35722038	1/1	a0001	487	349	81	52	162	10	42	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	a0002	487	36	9	10	9	2	6	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	a0003	487	5	0	3	2	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	a0004	487	4	0	4	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	a0005	487	4	0	0	4	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	a0006	487	1	0	1	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	a0007	487	1	1	0	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	a0008	487	1	1	0	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	a0009	487	1	0	0	1	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB33_chrX_120245812_120263398	1/0	a0001	672	172	48	30	82	1	10	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/1	a0002	673	152	18	31	78	8	16	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	a0003	672	5	5	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	a0004	672	3	3	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	a0005	569	1	0	0	1	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	a0006	673	1	0	0	1	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	a0007	672	1	1	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	a0008	672	1	1	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB34_chr9_126855639_126890878	1/1	a0001	504	241	60	43	93	12	31	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	a0002	504	3	0	0	3	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	a0003	504	1	0	1	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	a0004	504	1	0	0	0	0	1	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB37_chr1_173863380_173908547	1/1	a0001	503	395	94	62	178	18	41	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	a0002	503	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB38_chr3_141363504_141454792	1/0	a0001	1195	181	59	32	57	8	24	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/1	a0002	1195	55	0	10	40	1	3	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	a0003	1195	18	4	2	8	1	3	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	a0004	1195	6	2	0	4	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	a0005	1195	4	3	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	a0006	1195	2	2	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	a0007	1195	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	a0008	1195	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	a0009	1195	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	a0010	1195	1	0	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB39_chr12_56993836_57011546	1/1	a0001	712	300	81	68	119	7	23	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	a0002	712	5	1	2	0	2	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	a0003	712	3	3	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	a0004	712	2	0	0	2	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	a0005	712	1	0	1	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	a0006	712	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	a0007	712	1	0	0	0	1	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	a0008	712	1	0	0	0	0	1	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	a0009	712	1	0	0	1	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	a0010	712	1	0	1	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB3_chr11_62745963_62759160	1/1	a0001	524	321	73	67	134	16	29	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	a0002	524	49	20	1	27	0	1	copy fasta	ZBTB3	chr11	62745963	62759160