JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZBTB48_chr1_6574994_6594280	0/0	a0003	688	2	0	0	2	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	a0004	688	1	1	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	a0005	688	1	0	0	1	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	a0006	688	1	0	0	1	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	a0007	688	1	1	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	a0008	688	1	0	0	1	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	a0009	688	1	0	0	0	0	1	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	a0010	688	1	0	1	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB49_chr4_4285251_4326783	1/1	a0001	765	237	69	43	89	11	23	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0002	765	73	0	4	58	0	11	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0003	765	72	7	16	43	3	3	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0004	765	13	10	2	1	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0005	765	3	0	3	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0006	765	3	0	0	3	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0007	765	2	2	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0008	765	1	0	1	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0009	765	1	0	0	1	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0010	765	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0011	765	1	0	0	0	0	1	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0012	765	1	0	0	1	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0013	765	1	0	1	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	a0014	765	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB4_chr17_7454378_7484631	1/1	a0001	1013	242	64	33	104	7	32	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	a0002	1013	86	15	16	44	5	6	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	a0003	1013	57	10	22	21	0	4	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	a0004	1013	5	4	1	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	a0005	1013	4	0	2	0	2	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	a0006	1013	2	0	2	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	a0007	1013	2	0	0	0	0	2	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	a0008	1013	1	1	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	a0009	1013	1	0	0	1	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB5_chr9_37433102_37470450	1/1	a0001	677	355	85	59	162	11	36	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	a0002	677	18	1	9	1	1	6	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	a0003	677	3	3	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	a0004	677	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	a0005	677	1	0	0	1	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	a0006	677	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	a0007	677	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB6_chr9_122903056_122918323	1/1	a0001	424	402	92	73	183	18	34	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	a0002	424	1	0	1	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	a0003	424	1	0	0	1	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB7A_chr19_4038303_4071899	1/1	a0001	584	256	84	53	63	8	46	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	a0002	584	13	4	0	9	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	a0003	584	2	0	0	2	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	a0004	460	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	a0005	583	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	a0006	584	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	a0007	584	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	a0008	584	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7B_chr1_154997802_155023523	1/1	a0001	539	343	90	66	125	16	44	copy fasta	ZBTB7B	chr1	154997802	155023523