JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZBTB7B_chr1_154997802_155023523	0/0	a0002	539	2	0	2	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	a0003	531	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7C_chr18_48021672_48414383	1/1	a0001	619	158	68	32	30	8	18	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	a0002	619	8	8	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	a0003	619	5	3	2	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	a0004	616	2	0	0	2	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	a0005	619	1	1	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB8A_chr1_32534427_32610941	1/1	a0001	441	302	86	56	112	16	30	copy fasta	ZBTB8A	chr1	32534427	32610941
ZBTB8B_chr1_32460072_32501686	1/1	a0001	495	193	70	30	59	8	24	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	a0002	495	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	a0003	495	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8OS_chr1_32615820_32655550	1/1	a0001	167	314	80	64	116	16	36	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB9_chr6_33449576_33462544	0/1	a0001	473	348	76	73	148	16	34	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	a0002	473	20	19	1	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	a0003	473	2	0	2	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	a0004	473	1	0	1	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	a0005	473	1	1	0	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	a0006	473	1	1	0	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	a0007	473	1	0	1	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	a0008	473	1	1	0	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZC2HC1A_chr8_78661089_78724765	1/1	a0001	325	259	83	55	80	16	23	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	a0002	325	3	1	1	0	0	1	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1B_chr6_143859474_143943343	1/1	a0001	222	315	72	54	143	6	38	copy fasta	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	a0002	222	11	11	0	0	0	0	copy fasta	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	a0003	222	3	3	0	0	0	0	copy fasta	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	a0004	222	1	0	0	1	0	0	copy fasta	ZC2HC1B	chr6	143859474	143943343
ZC2HC1C_chr14_75064641_75084988	0/1	a0001	456	213	26	39	120	5	22	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	1/0	a0002	456	153	58	35	28	7	24	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0003	456	7	7	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0004	19	7	0	0	7	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0005	456	3	0	0	3	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0006	456	2	0	0	2	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0007	456	2	0	0	2	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0008	456	2	0	0	0	0	2	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0009	456	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0010	456	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0011	456	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0012	456	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	a0013	456	1	1	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC3H10_chr12_56113266_56132514	1/1	a0001	434	346	86	70	140	14	34	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	a0002	434	2	0	0	0	2	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H11A_chr1_203790623_203859124	1/1	a0001	810	378	92	69	167	14	34	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	a0002	810	2	0	2	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	a0003	810	1	0	1	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	a0004	810	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	a0005	810	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	a0006	810	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11B_chr1_219603012_219618105	1/0	a0001	805	201	22	52	100	8	18	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/1	a0002	805	155	10	12	109	4	19	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0003	805	36	27	5	0	2	2	copy fasta	ZC3H11B	chr1	219603012	219618105