JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZC3H11B_chr1_219603012_219618105	0/0	a0004	805	11	10	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0005	805	9	9	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0006	805	6	0	1	0	3	2	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0007	805	6	6	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0008	805	5	4	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0009	805	4	4	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0010	805	2	0	0	2	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0011	805	2	2	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0012	46	1	0	0	1	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0013	805	1	0	0	1	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0014	805	1	0	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0015	805	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0016	805	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0017	805	1	0	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0018	805	1	0	0	1	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0019	805	1	0	0	0	1	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0020	805	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0021	805	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	a0022	805	1	0	0	0	0	1	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11C_chr6_65296476_65311574	0/1	a0001	805	336	61	61	156	14	43	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0002	805	44	7	9	21	4	3	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0003	805	17	15	2	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0004	805	13	0	0	13	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0005	509	6	0	0	6	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0006	805	4	4	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0007	805	4	4	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0008	805	3	0	0	3	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0009	805	2	2	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0010	805	2	0	0	0	0	2	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0011	805	2	0	0	2	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0012	805	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0013	805	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0014	642	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0015	805	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0016	756	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	1/0	a0017	805	1	0	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0018	805	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0019	805	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	a0020	805	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H12A_chr1_37469580_37489377	1/1	a0001	599	415	88	75	190	15	45	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0002	599	4	0	1	0	3	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0003	599	3	3	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0004	599	3	1	2	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0005	599	1	0	1	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0006	599	1	0	0	1	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0007	599	1	0	0	0	0	1	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0008	599	1	0	0	0	0	1	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0009	599	1	0	1	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0010	599	1	1	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0011	599	1	0	0	0	0	1	copy fasta	ZC3H12A	chr1	37469580	37489377