JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZC3H12A_chr1_37469580_37489377	0/0	a0012	599	1	0	0	1	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	a0013	599	1	1	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12B_chrX_65029826_65512887	0/0	a0001	836	164	54	27	63	5	15	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	a0002	702	1	0	0	0	0	1	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12C_chr11_110088392_110176841	1/1	a0001	883	358	91	62	156	14	33	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	a0002	883	2	0	0	2	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	a0003	883	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	a0004	883	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	a0005	883	1	0	0	0	0	1	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	a0006	883	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12D_chr6_149441795_149490014	0/0	a0001	527	162	10	25	108	2	17	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	1/0	a0002	527	148	30	32	57	9	19	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/1	a0003	527	42	20	12	1	2	6	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0004	527	27	15	3	1	0	8	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0005	527	6	6	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0006	527	5	0	4	0	1	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0007	527	4	4	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0008	527	4	0	0	4	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0009	527	3	0	0	3	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0010	527	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0011	527	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0012	527	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0013	527	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0014	527	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0015	527	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0016	527	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	a0017	527	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H13_chr13_45949465_46057746	0/0	a0001	1669	234	45	39	124	6	20	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	1/0	a0002	1669	62	10	17	24	2	8	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0003	1669	11	8	3	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0004	1669	2	2	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0005	1669	2	2	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0006	1669	2	0	2	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0007	1669	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0008	1669	1	0	1	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0009	1669	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/1	a0010	1669	1	0	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0011	1669	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0012	1669	1	0	0	0	0	1	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0013	1669	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0014	1669	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0015	1669	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0016	1669	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	a0017	1669	1	0	0	0	0	1	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H14_chr14_88558037_88632596	1/1	a0001	736	309	87	58	116	14	32	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	a0002	736	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	a0003	736	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	a0004	730	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	a0005	736	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	a0006	736	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596