JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZC3H15_chr2_186481260_186514361	1/1	a0001	426	373	95	75	150	14	37	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	a0002	426	1	0	0	0	0	1	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	a0003	426	1	1	0	0	0	0	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	a0004	426	1	0	1	0	0	0	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H18_chr16_88565403_88636964	1/1	a0001	953	362	86	68	152	12	42	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0002	953	4	2	2	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0003	953	2	0	0	2	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0004	953	2	0	0	0	0	2	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0005	953	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0006	953	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0007	953	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0008	953	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0009	953	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0010	953	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0011	953	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	a0012	953	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H3_chr8_143432659_143546447	1/0	a0001	948	67	29	14	10	5	8	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0002	948	54	0	3	40	3	8	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0003	948	40	0	6	31	2	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/1	a0004	948	38	2	11	17	0	7	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0005	948	37	3	10	21	0	3	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0006	948	21	5	5	6	2	3	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0007	948	17	16	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0008	948	10	9	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0009	948	9	7	1	0	0	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0010	948	6	0	0	6	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0011	948	6	5	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0012	948	6	0	0	5	1	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0013	948	4	1	1	1	0	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0014	948	3	3	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0015	948	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0016	949	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0017	948	2	0	1	0	1	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0018	948	2	0	2	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0019	949	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0020	948	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0021	948	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0022	948	2	0	1	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0023	948	1	0	0	0	0	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0024	949	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0025	948	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0026	948	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0027	948	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0028	948	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0029	948	1	0	0	0	1	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0030	948	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0031	948	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0032	948	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0033	948	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0034	948	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447