JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZC3H3_chr8_143432659_143546447	0/0	a0035	948	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0036	948	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0037	948	1	0	0	0	0	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0038	949	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0039	949	1	0	0	0	1	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	a0040	948	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H4_chr19_47059187_47118776	1/1	a0001	1303	305	47	63	136	14	43	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0002	1303	37	34	3	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0003	1303	3	0	0	3	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0004	1303	2	0	1	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0005	1303	2	0	0	2	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0006	1303	2	0	0	2	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0007	1303	2	0	2	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0008	1303	1	0	1	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0009	1303	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0010	1303	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0011	1303	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0012	1303	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0013	1303	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	a0014	1303	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H6_chr2_112270597_112345059	1/1	a0001	1189	275	68	53	120	8	24	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	a0002	1189	2	2	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	a0003	1189	2	0	0	0	0	2	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	a0004	1189	2	0	0	2	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	a0005	1189	2	0	2	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	a0006	1189	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	a0007	1189	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	a0008	1189	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	a0009	1189	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	a0010	1189	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H7A_chr16_11745597_11802258	1/1	a0001	971	371	65	71	176	16	41	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	a0002	971	8	2	3	0	2	1	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	a0003	971	5	0	0	5	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	a0004	971	2	0	2	0	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	a0005	971	1	0	0	1	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	a0006	971	1	0	0	1	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	a0007	971	1	0	0	1	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	a0008	971	1	1	0	0	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7B_chr22_41296525_41365147	1/0	a0001	977	308	71	55	141	12	28	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	a0002	977	13	11	2	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	a0003	977	2	2	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	a0004	977	1	0	1	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	a0005	977	1	0	0	1	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H8_chr2_112206529_112260042	1/1	a0001	291	310	76	61	129	12	30	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	a0002	291	5	4	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	a0003	291	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	a0004	291	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	a0005	291	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3HAV1L_chr7_139020706_139041042	0/0	a0000	0	2	1	0	1	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	1/1	a0001	300	394	90	61	197	10	34	copy fasta	ZC3HAV1L	chr7	139020706	139041042