JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZC3HAV1L_chr7_139020706_139041042	0/0	a0002	300	14	5	3	0	4	2	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1_chr7_139038515_139114720	0/0	a0001	902	92	33	10	25	5	19	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	1/1	a0002	902	88	12	22	42	4	6	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0003	902	36	2	10	24	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0004	902	19	4	0	14	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0005	902	18	3	2	11	1	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0006	902	18	15	0	3	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0007	902	12	1	2	9	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0008	902	9	5	2	1	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0009	902	4	4	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0010	902	3	0	0	3	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0011	902	3	0	0	3	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0012	902	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0013	902	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0014	902	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0015	529	1	0	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0016	902	1	0	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0017	902	1	0	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0018	902	1	0	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0019	902	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0020	902	1	0	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0021	902	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0022	902	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	a0023	902	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HC1_chr7_130013292_130056374	1/0	a0001	502	179	71	32	52	5	18	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	a0002	502	91	8	17	55	1	10	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/1	a0003	502	33	3	17	3	5	4	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	a0004	502	4	4	0	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	a0005	502	3	0	2	0	1	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	a0006	502	2	1	1	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	a0007	502	1	1	0	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	a0008	502	1	0	0	1	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	a0009	502	1	0	1	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	a0010	502	1	0	0	1	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC4H2_chrX_64910807_64981450	1/1	a0001	224	208	62	39	82	7	16	copy fasta	ZC4H2	chrX	64910807	64981450
ZCCHC10_chr5_132991985_133031549	1/1	a0001	192	310	95	50	123	6	34	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	a0002	192	1	1	0	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	a0003	51	1	0	0	1	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC12_chrX_118818824_118831968	1/1	a0001	402	316	73	57	145	11	28	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	a0002	402	1	1	0	0	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	a0003	372	1	0	0	1	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC13_chrX_74299180_74310034	1/1	a0001	166	240	60	50	93	5	30	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	a0002	166	8	8	0	0	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	a0003	14	2	2	0	0	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	a0004	166	2	1	1	0	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	a0005	19	1	1	0	0	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	a0006	96	1	0	0	1	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC14_chr16_87401248_87498024	1/0	a0001	1086	161	72	19	56	3	10	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/1	a0002	1086	103	3	31	37	4	27	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	a0003	1086	39	3	6	29	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024