JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BVES_chr6_105091822_105142157	0/0	a0004	360	1	0	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	a0005	360	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BYSL_chr6_41916499_41938046	1/1	a0001	437	405	91	77	179	14	42	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0002	437	43	0	1	34	1	7	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0003	437	4	3	1	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0004	437	3	3	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0005	437	1	0	1	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0006	437	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0007	437	1	0	0	1	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0008	437	1	0	0	1	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0009	437	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0010	437	1	0	0	0	1	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0011	437	1	0	0	1	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0012	437	1	0	0	0	0	1	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	a0013	437	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BZW1_chr2_200806910_200832338	1/1	a0001	419	387	85	70	166	16	48	copy fasta	BZW1	chr2	200806910	200832338
BZW1_chr2_200806910_200832338	0/0	a0002	419	1	1	0	0	0	0	copy fasta	BZW1	chr2	200806910	200832338
BZW2_chr7_16641181_16711517	1/1	a0001	419	418	100	72	180	18	46	copy fasta	BZW2	chr7	16641181	16711517
C10orf105_chr10_71706701_71724778	1/1	a0001	133	416	85	81	192	14	42	copy fasta	C10orf105	chr10	71706701	71724778
C10orf105_chr10_71706701_71724778	0/0	a0002	133	8	6	2	0	0	0	copy fasta	C10orf105	chr10	71706701	71724778
C10orf105_chr10_71706701_71724778	0/0	a0003	133	7	6	1	0	0	0	copy fasta	C10orf105	chr10	71706701	71724778
C10orf105_chr10_71706701_71724778	0/0	a0004	133	1	1	0	0	0	0	copy fasta	C10orf105	chr10	71706701	71724778
C10orf120_chr10_122692709_122704846	0/0	a0001	335	279	51	60	124	11	33	copy fasta	C10orf120	chr10	122692709	122704846
C10orf120_chr10_122692709_122704846	1/1	a0002	335	84	20	12	37	3	10	copy fasta	C10orf120	chr10	122692709	122704846
C10orf120_chr10_122692709_122704846	0/0	a0003	335	38	0	5	31	0	2	copy fasta	C10orf120	chr10	122692709	122704846
C10orf120_chr10_122692709_122704846	0/0	a0004	335	34	12	3	18	0	1	copy fasta	C10orf120	chr10	122692709	122704846
C10orf120_chr10_122692709_122704846	0/0	a0005	335	9	9	0	0	0	0	copy fasta	C10orf120	chr10	122692709	122704846
C10orf120_chr10_122692709_122704846	0/0	a0006	335	2	0	0	2	0	0	copy fasta	C10orf120	chr10	122692709	122704846
C10orf143_chr10_130058896_130115830	1/1	a0001	108	363	86	71	153	16	35	copy fasta	C10orf143	chr10	130058896	130115830
C10orf143_chr10_130058896_130115830	0/0	a0002	108	27	4	5	17	0	1	copy fasta	C10orf143	chr10	130058896	130115830
C10orf143_chr10_130058896_130115830	0/0	a0003	108	4	4	0	0	0	0	copy fasta	C10orf143	chr10	130058896	130115830
C10orf53_chr10_49674651_49702532	1/1	a0001	93	426	96	76	198	10	44	copy fasta	C10orf53	chr10	49674651	49702532
C10orf62_chr10_97584721_97595934	1/0	a0001	223	328	64	56	164	12	31	copy fasta	C10orf62	chr10	97584721	97595934
C10orf62_chr10_97584721_97595934	0/1	a0002	223	98	30	23	24	4	16	copy fasta	C10orf62	chr10	97584721	97595934
C10orf62_chr10_97584721_97595934	0/0	a0003	223	2	2	0	0	0	0	copy fasta	C10orf62	chr10	97584721	97595934
C10orf62_chr10_97584721_97595934	0/0	a0004	223	2	0	0	2	0	0	copy fasta	C10orf62	chr10	97584721	97595934
C10orf62_chr10_97584721_97595934	0/0	a0005	223	1	0	0	0	0	1	copy fasta	C10orf62	chr10	97584721	97595934
C10orf62_chr10_97584721_97595934	0/0	a0006	223	1	0	1	0	0	0	copy fasta	C10orf62	chr10	97584721	97595934
C10orf67_chr10_23197696_23349797	1/1	a0001	550	307	77	53	113	14	48	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	a0002	550	10	0	9	1	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	a0003	550	3	3	0	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	a0004	550	1	0	0	1	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	a0005	550	1	1	0	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	a0006	550	1	0	0	1	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	a0007	550	1	1	0	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	a0008	550	1	0	0	1	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	a0009	550	1	0	0	1	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf71_chr10_49294170_49332492	0/1	a0001	1435	148	32	21	75	4	15	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	a0002	1435	93	17	17	42	4	13	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	a0003	1435	40	5	9	21	2	3	copy fasta	C10orf71	chr10	49294170	49332492