JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZCCHC14_chr16_87401248_87498024	0/0	a0004	1086	14	13	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	a0005	1086	9	3	2	1	1	2	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	a0006	1086	6	0	0	6	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	a0007	1086	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	a0008	1086	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	a0009	1086	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	a0010	1086	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	a0011	1086	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	a0012	1086	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC17_chr1_31292032_31369936	1/1	a0001	241	347	81	60	160	10	34	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	a0002	241	1	1	0	0	0	0	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC18_chrX_104107523_104120842	1/1	a0001	403	305	61	51	146	13	32	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	a0002	403	13	12	1	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	a0003	403	1	0	0	0	0	1	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	a0004	64	1	1	0	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	a0005	403	1	0	0	1	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC24_chr10_79377325_79450624	1/1	a0001	241	382	88	66	166	14	46	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC2_chr18_62518025_62583579	0/0	a0001	1179	171	49	32	61	9	20	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	1/1	a0002	1178	119	20	24	52	6	15	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0003	1178	3	2	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0004	1179	3	3	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0005	1179	2	2	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0006	1174	1	0	0	0	1	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0007	1178	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0008	1178	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0009	1179	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0010	1179	1	0	1	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0011	1179	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0012	1179	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0013	1179	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0014	1179	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0015	1179	1	0	0	0	0	1	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0016	1179	1	0	0	1	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0017	1179	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0018	1178	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	a0019	1178	1	1	0	0	0	0	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC3_chr20_292570_305321	1/1	a0001	403	367	72	78	164	10	41	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	a0002	404	58	19	4	30	0	5	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	a0003	403	1	0	0	1	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	a0004	403	1	0	0	1	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	a0005	403	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC4_chr4_25307774_25375383	0/1	a0001	513	367	73	71	171	11	40	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	1/0	a0002	513	61	2	5	46	1	6	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0003	513	12	11	1	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0004	513	7	7	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0005	513	6	0	6	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0006	513	2	1	0	1	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0007	513	1	0	0	1	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0008	513	1	0	0	1	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0009	513	1	0	1	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383