JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZDHHC11_chr5_790605_855986	0/0	a0015	412	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0016	412	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0017	412	1	0	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0018	412	1	0	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0019	412	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0020	412	1	0	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0021	412	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0022	412	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0023	412	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0024	412	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0025	412	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0026	412	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0027	412	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0028	412	1	0	0	0	0	1	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC12_chr9_128715873_128729127	0/1	a0001	267	327	81	68	126	12	39	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	a0002	267	18	2	6	5	0	5	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	a0003	267	7	4	0	3	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	a0004	267	3	0	0	3	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	a0005	267	3	0	0	3	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	1/0	a0006	267	2	1	0	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	a0007	267	1	1	0	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	a0008	267	1	1	0	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC13_chr11_19112168_19181415	0/1	a0001	622	194	21	33	109	11	19	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	1/0	a0002	622	148	60	22	51	1	13	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	a0003	622	4	0	0	4	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	a0004	622	1	0	0	1	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	a0005	622	1	1	0	0	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	a0006	622	1	0	1	0	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	a0007	29	1	0	0	1	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC14_chr6_157376190_157683157	1/1	a0001	488	185	63	32	48	8	32	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	a0002	488	2	2	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	a0003	488	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC15_chrX_75363427_75528037	1/1	a0001	337	236	74	41	82	5	32	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	a0002	337	1	0	1	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC16_chr10_97441175_97462370	1/1	a0001	377	421	92	77	192	12	46	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	a0002	377	1	0	1	0	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC17_chr12_76759115_76858696	1/0	a0001	632	295	87	54	115	11	27	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/1	a0002	632	19	0	11	0	3	4	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	a0003	632	1	0	1	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	a0004	632	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	a0005	632	1	0	0	1	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	a0006	632	1	0	0	0	0	1	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC18_chr1_26821688_26862604	1/1	a0001	388	256	81	67	50	16	40	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	a0002	388	5	5	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	a0003	388	1	0	1	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC19_chr3_196192452_196216400	1/1	a0001	309	404	78	81	185	16	42	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0002	309	9	7	2	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0003	309	9	9	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0004	309	5	0	0	3	0	2	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0005	309	5	0	0	2	0	3	copy fasta	ZDHHC19	chr3	196192452	196216400