JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZDHHC19_chr3_196192452_196216400	0/0	a0006	309	3	0	0	2	0	1	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0007	309	2	2	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0008	309	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0009	309	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0010	309	1	0	1	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0011	309	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	a0012	309	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC1_chr16_67389152_67421477	1/1	a0001	482	196	81	40	33	8	32	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	a0002	482	2	2	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	a0003	482	1	0	0	1	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	a0004	482	1	1	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC20_chr13_21367571_21464303	1/1	a0001	365	295	94	67	84	14	34	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	a0002	365	3	0	0	3	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	a0003	365	1	0	0	0	0	1	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	a0004	365	1	0	0	0	0	1	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	a0005	365	1	0	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	a0006	365	1	0	0	1	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC21_chr9_14606071_14698432	1/1	a0001	265	413	96	74	185	16	40	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	a0002	265	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC22_chr14_77126270_77146791	1/1	a0001	263	454	98	80	206	18	50	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC23_chr3_113943013_113968373	0/0	a0001	435	277	60	49	132	13	23	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	1/1	a0002	435	165	32	33	73	5	20	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	a0003	435	5	5	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	a0004	435	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	a0005	435	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	a0006	435	1	0	0	0	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC24_chr11_66530626_66551048	1/1	a0001	284	295	78	47	122	13	33	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	a0002	284	113	17	17	66	3	10	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	a0003	284	1	0	0	0	0	1	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	a0004	284	1	1	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC2_chr8_17151482_17229799	1/1	a0001	367	387	86	68	178	12	41	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	a0002	367	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	a0003	367	1	0	0	0	0	1	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	a0004	367	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC3_chr3_44910261_44981174	1/1	a0001	299	305	90	65	102	12	34	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	a0002	299	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC4_chr7_6572454_6594374	1/0	a0001	344	283	54	47	134	12	35	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/1	a0002	344	121	33	33	41	4	9	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	a0003	344	2	2	0	0	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	a0004	344	1	1	0	0	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	a0005	344	1	0	0	1	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC5_chr11_57663114_57706182	1/1	a0001	715	314	84	72	101	16	39	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	a0002	715	6	0	0	6	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	a0003	715	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	a0004	715	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	a0005	715	1	0	0	0	0	1	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	a0006	79	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC6_chr10_112425300_112451914	1/1	a0001	413	405	96	67	183	12	45	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	a0002	413	4	0	3	0	0	1	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	a0003	413	1	0	0	1	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914