JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZDHHC7_chr16_84969175_85016535	1/1	a0001	308	374	81	69	160	18	44	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	a0002	308	15	13	2	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	a0003	308	1	0	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC8_chr22_20126804_20153007	1/1	a0001	765	379	97	60	160	16	44	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	a0002	765	22	0	2	18	0	2	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	a0003	765	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	a0004	765	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	a0005	765	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC9_chrX_129798288_129848886	1/1	a0001	364	257	78	32	118	5	22	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	a0002	55	1	0	0	1	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZEB1_chr10_31314216_31534804	1/1	a0001	1125	180	70	22	70	0	16	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	a0002	1125	9	9	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	a0003	1125	2	1	1	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	a0004	1125	2	2	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	a0005	1124	2	2	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	a0006	1125	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	a0007	1125	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	a0008	1125	1	0	1	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	a0009	1125	1	0	0	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	a0010	1125	1	0	0	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB2_chr2_144379081_144525119	1/1	a0001	1214	245	74	34	94	6	35	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	a0002	1214	1	0	0	0	0	1	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	a0003	1214	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	a0004	1214	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZER1_chr9_128724786_128776927	1/1	a0001	766	328	82	59	133	8	44	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	a0002	766	1	0	0	1	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	a0003	766	1	0	1	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZFAND1_chr8_81696337_81726300	1/1	a0001	268	377	98	64	165	12	36	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	a0002	268	1	0	0	1	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND2A_chr7_1147907_1165196	1/1	a0001	145	418	91	73	191	18	43	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	a0002	145	10	3	3	3	0	1	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	a0003	145	2	0	0	2	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	a0004	145	1	0	0	1	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	a0005	145	1	0	0	1	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2B_chr2_219201782_219214648	1/1	a0001	257	410	90	79	177	16	46	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND2B_chr2_219201782_219214648	0/0	a0002	257	3	0	3	0	0	0	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND2B_chr2_219201782_219214648	0/0	a0003	257	2	2	0	0	0	0	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND2B_chr2_219201782_219214648	0/0	a0004	257	1	0	0	1	0	0	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND3_chr6_37814727_38159624	1/1	a0001	227	318	92	54	116	16	38	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND4_chr10_45610500_45677772	1/1	a0001	727	308	58	52	151	12	33	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0002	727	39	2	20	8	4	5	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0003	727	16	6	1	8	0	1	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0004	727	12	12	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0005	727	8	7	1	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0006	727	4	0	0	4	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0007	727	2	0	2	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0008	727	1	0	1	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0009	727	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0010	727	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0011	727	1	0	0	1	0	0	copy fasta	ZFAND4	chr10	45610500	45677772