JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFAND4_chr10_45610500_45677772	0/0	a0012	727	1	0	0	1	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0013	727	1	0	0	0	0	1	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0014	727	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0015	727	1	0	1	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	a0016	727	1	0	0	1	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND5_chr9_72346413_72370208	1/1	a0001	213	388	96	74	172	14	30	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND6_chr15_80054676_80143393	1/1	a0001	208	373	91	70	150	18	42	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	a0002	208	1	1	0	0	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAT_chr8_134472788_134718031	1/1	a0001	1243	185	53	37	66	8	19	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0002	1243	45	1	5	26	3	10	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0003	1243	18	8	6	0	1	3	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0004	1243	7	5	2	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0005	1243	5	2	3	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0006	1243	3	3	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0007	1243	2	2	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0008	1243	1	1	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0009	1243	1	1	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0010	1243	1	0	1	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0011	1243	1	0	1	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0012	1243	1	0	0	1	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0013	1243	1	1	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0014	1243	1	0	0	1	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0015	1243	1	0	1	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	a0016	1243	1	1	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFC3H1_chr12_71604599_71668848	1/1	a0001	1989	313	88	40	134	14	35	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	a0002	1989	8	0	4	2	0	2	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	a0003	1989	1	0	0	0	0	1	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	a0004	1989	1	0	0	1	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	a0005	1989	1	0	0	1	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFHX2_chr14_23515857_23556765	1/0	a0001	2572	194	16	36	109	8	24	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0002	2572	54	9	16	26	0	3	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0003	2572	33	31	1	0	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/1	a0004	2572	24	0	4	10	5	4	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0005	2572	10	1	2	6	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0006	2572	8	8	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0007	2572	7	5	2	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0008	2572	5	4	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0009	2572	4	4	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0010	2572	4	4	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0011	2572	4	0	0	0	0	4	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0012	2572	3	3	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0013	2572	3	2	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0014	2572	3	0	1	2	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0015	2572	2	2	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0016	2572	2	0	2	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0017	2572	2	2	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0018	2572	2	0	0	1	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0019	2572	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0020	2572	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	a0021	2572	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765