JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	SAS	aseq	genename	chr	start	end
ZFHX3_chr16_72777885_73053128	0/1	a0028	3704	2	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0029	3702	2	0	0	2	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0030	3703	1	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0031	3702	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0032	3703	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0033	3708	1	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0034	3703	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0035	3704	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0036	3703	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0037	3703	1	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0038	3703	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0039	3701	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0040	3703	1	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0041	3703	1	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0042	3700	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0043	3694	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0044	3702	1	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0045	3700	1	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0046	3707	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0047	3703	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0048	3704	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0049	3703	1	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0050	3703	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0051	3703	1	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0052	3701	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0053	3695	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0054	3704	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0055	3702	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0056	3705	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0057	3703	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0058	3700	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0059	3703	1	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0060	3703	1	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0061	3703	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0062	3703	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0063	3702	1	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0064	3705	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0065	3703	1	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0066	3705	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0067	3701	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0068	3703	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0069	3701	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0070	3703	1	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0071	3704	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0072	3700	1	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0073	3703	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0074	3704	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0075	3705	1	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0076	3704	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0077	3703	1	0	0	1	0	copy fasta	ZFHX3	chr16	72777885	73053128