JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFHX3_chr16_72777885_73053128	0/0	a0078	3703	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0079	3704	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0080	3703	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0081	3704	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	a0082	3703	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX4_chr8_76676247_76872281	1/0	a0001	3616	58	8	12	30	2	5	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0002	3616	43	7	1	33	1	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0003	3615	42	35	1	3	1	2	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0004	2138	19	3	2	10	0	4	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0005	3615	14	1	3	10	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0006	2137	14	8	2	1	0	3	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0007	2138	7	0	0	7	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0008	3616	6	1	0	5	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0009	3616	6	6	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0010	2137	5	0	2	3	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0011	3615	3	0	0	3	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0012	3616	2	0	0	0	0	2	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0013	3615	2	1	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0014	3615	2	1	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/1	a0015	3616	2	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0016	3616	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0017	3615	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0018	3615	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0019	3615	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0020	3616	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0021	3616	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0022	3616	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0023	3616	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0024	3616	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0025	3616	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0026	3615	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0027	3615	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0028	3615	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0029	3616	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0030	2138	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0031	3615	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0032	2138	1	0	0	0	0	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0033	2137	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	a0034	3616	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFP14_chr19_36329453_36384201	1/1	a0001	533	353	84	68	155	12	32	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	a0002	533	8	8	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	a0003	533	6	6	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	a0004	533	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP1_chr16_75143524_75177234	1/1	a0001	407	360	90	74	130	16	48	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	a0002	407	2	2	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	a0003	407	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	a0004	407	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP28_chr19_56533948_56561808	1/0	a0001	868	111	13	22	60	4	11	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0002	868	108	16	16	63	3	10	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0003	868	86	39	7	34	1	5	copy fasta	ZFP28	chr19	56533948	56561808