JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFP28_chr19_56533948_56561808	0/0	a0004	868	67	22	17	16	5	7	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/1	a0005	868	38	1	14	14	3	5	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0006	868	7	1	2	0	0	4	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0007	868	3	0	1	0	2	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0008	868	3	3	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0009	868	3	0	3	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0010	868	1	1	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0011	868	1	0	0	1	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0012	868	1	1	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0013	868	1	1	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0014	868	1	0	0	0	0	1	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0015	868	1	0	0	1	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0016	868	1	0	0	0	0	1	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	a0017	868	1	0	0	1	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP2_chr5_178890913_178938212	1/1	a0001	461	367	63	66	175	18	43	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	a0002	461	19	17	2	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	a0003	461	2	2	0	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	a0004	461	2	0	0	1	0	1	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	a0005	461	1	0	1	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	a0006	461	1	0	1	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP30_chr19_37626006_37660465	1/1	a0001	519	373	84	68	168	16	35	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	a0002	519	4	4	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	a0003	519	2	0	0	2	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	a0004	519	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	a0005	519	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	a0006	519	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	a0007	519	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	a0008	519	1	0	0	0	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP36L1_chr14_68782662_68798067	1/1	a0001	338	420	80	78	196	16	48	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	a0002	338	2	1	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	a0003	338	1	1	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	a0004	338	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L2_chr2_43217402_43231606	1/1	a0001	494	377	86	66	178	11	34	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0002	494	19	6	2	1	0	10	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0003	494	11	0	9	0	0	2	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0004	494	6	0	0	6	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0005	494	5	5	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0006	496	3	0	0	0	1	2	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0007	494	2	0	0	2	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0008	494	1	0	0	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0009	494	1	0	0	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0010	494	1	0	1	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0011	494	1	1	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	a0012	494	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36_chr19_39401847_39414407	1/1	a0001	326	394	83	74	173	18	44	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	a0002	326	7	7	0	0	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	a0003	326	3	0	0	3	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	a0004	326	2	0	2	0	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP37_chr9_113033377_113061724	0/1	a0001	630	241	27	51	134	8	20	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	1/0	a0002	630	206	55	28	92	6	24	copy fasta	ZFP37	chr9	113033377	113061724