JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFP37_chr9_113033377_113061724	0/0	a0003	630	4	0	4	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	a0004	630	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	a0005	630	1	0	1	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	a0006	630	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP3_chr17_5073467_5101374	1/1	a0001	502	400	93	63	191	14	37	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	a0002	502	3	0	0	3	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	a0003	502	1	0	1	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	a0004	502	1	0	0	0	0	1	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	a0005	502	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP41_chr8_143241939_143267705	1/1	a0001	198	308	92	60	96	15	43	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	a0002	198	2	2	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	a0003	198	1	0	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	a0004	198	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	a0005	198	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	a0006	198	1	0	0	0	1	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	a0007	198	1	0	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	a0008	198	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP42_chr4_187990771_188010046	1/1	a0001	310	443	91	80	205	15	50	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	a0002	310	2	2	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	a0003	310	1	0	0	1	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	a0004	310	1	1	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	a0005	310	1	0	0	0	1	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP57_chr6_29667483_29686152	0/1	a0001	536	372	65	80	179	10	37	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	a0002	536	20	0	0	19	0	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	a0003	536	14	11	2	0	0	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	a0004	536	9	0	5	2	1	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	a0005	536	7	6	1	0	0	0	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	a0006	536	5	0	0	2	1	2	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	a0007	536	4	4	0	0	0	0	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	a0008	536	2	0	0	0	0	2	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	a0009	536	1	0	0	0	0	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	a0010	536	1	0	0	0	0	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP62_chr5_180842611_180866276	0/0	a0001	39	294	29	60	162	10	33	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	1/1	a0002	39	106	65	16	12	2	9	copy fasta	ZFP62	chr5	180842611	180866276
ZFP64_chr20_52146278_52196779	1/1	a0001	681	280	64	54	114	16	30	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0002	681	71	11	16	32	2	10	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0003	681	3	3	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0004	681	2	2	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0005	681	2	2	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0006	681	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0007	681	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0008	681	1	0	0	1	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0009	681	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0010	681	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	a0011	681	1	0	0	1	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP69B_chr1_40445476_40468715	1/1	a0001	534	343	92	50	161	11	27	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	a0002	534	95	3	13	57	5	17	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	a0003	534	23	0	14	9	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	a0004	534	3	3	0	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	a0005	534	2	2	0	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715