JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFPM1_chr16_88448280_88542031	0/0	a0017	1004	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0018	668	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0019	668	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0020	1005	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0021	795	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0022	1004	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0023	979	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0024	1004	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0025	1004	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0026	1004	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0027	1006	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0028	1004	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0029	1004	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0030	1004	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0031	667	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0032	1003	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0033	1006	1	1	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0034	668	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0035	668	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0036	1004	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0037	1004	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0038	1004	1	0	0	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0039	668	1	0	1	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0040	1004	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0041	1004	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	a0042	1004	1	0	0	1	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM2_chr8_105313438_105809539	1/0	a0001	1151	50	17	14	7	0	11	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	a0002	1151	24	11	4	6	0	3	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	a0003	1151	8	8	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	a0004	1151	3	0	0	0	0	3	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	a0005	1151	1	0	1	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/1	a0006	1151	1	0	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	a0007	1151	1	0	1	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	a0008	1151	1	0	0	1	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	a0009	1151	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	a0010	1151	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	a0011	1151	1	0	0	0	0	1	copy fasta	ZFPM2	chr8	105313438	105809539
ZFR2_chr19_3799024_3874038	0/0	a0001	939	130	31	22	68	6	3	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	1/0	a0002	939	129	20	32	55	1	20	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/1	a0003	939	87	19	19	28	4	16	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0004	939	9	1	1	7	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0005	939	6	2	0	4	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0006	939	4	0	2	0	0	2	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0007	939	4	0	0	4	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0008	939	4	4	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0009	939	2	0	0	2	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0010	939	2	2	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0011	939	2	0	2	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0012	939	2	0	0	2	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0013	939	2	0	0	2	0	0	copy fasta	ZFR2	chr19	3799024	3874038