JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFR2_chr19_3799024_3874038	0/0	a0014	939	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0015	939	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0016	939	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0017	939	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0018	939	1	0	0	0	1	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0019	939	1	0	0	0	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0020	939	1	0	0	0	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0021	939	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0022	939	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0023	939	1	0	0	0	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0024	939	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0025	939	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0026	939	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0027	939	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	a0028	939	1	0	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR_chr5_32349350_32449740	0/0	a0001	1074	228	78	32	92	6	20	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/1	a0002	1074	106	5	18	65	6	11	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	1/0	a0003	1074	44	5	13	20	0	5	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	a0004	1074	2	0	0	0	0	2	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	a0005	1074	1	0	1	0	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	a0006	1074	1	0	0	1	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFTA_chr11_63754892_63773775	1/1	a0001	678	245	78	46	69	15	35	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	a0002	678	3	0	0	0	0	3	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	a0003	678	3	0	0	3	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	a0004	683	2	2	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	a0005	678	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	a0006	678	1	0	0	0	1	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	a0007	678	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTRAF1_chr8_144444582_144467871	1/1	a0001	404	435	93	76	205	16	43	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	a0002	405	5	5	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	a0003	404	2	0	2	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	a0004	404	2	0	1	0	0	1	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	a0005	404	1	0	1	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	a0006	404	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFX_chrX_24144729_24221255	1/1	a0001	805	288	67	55	119	13	32	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	a0002	805	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	a0003	802	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	a0004	805	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	a0005	804	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	a0006	805	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	a0007	808	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	a0008	805	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFYVE16_chr5_80403064_80488379	0/1	a0001	1539	148	39	28	42	11	27	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	1/0	a0002	1539	45	26	5	6	2	5	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0003	1539	16	10	1	0	3	2	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0004	1539	3	3	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0005	1539	2	1	1	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0006	1539	2	2	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0007	1539	2	2	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0008	1539	2	0	2	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379