JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFYVE16_chr5_80403064_80488379	0/0	a0009	1539	2	0	0	2	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0010	1539	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0011	1539	1	0	0	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0012	1539	1	0	1	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	a0013	1539	1	0	0	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE19_chr15_40802089_40820084	0/1	a0001	471	181	26	34	97	8	15	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	a0002	109	100	12	22	50	2	14	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	1/0	a0003	471	57	15	9	21	6	5	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	a0004	471	25	24	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	a0005	109	16	13	1	2	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	a0006	109	1	0	0	1	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	a0007	471	1	0	0	1	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	a0008	109	1	0	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE1_chr14_72964451_73032106	1/1	a0001	777	366	82	68	166	11	37	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	a0002	777	6	0	2	2	1	1	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	a0003	777	1	0	0	1	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	a0004	777	1	0	0	1	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE21_chr14_103710810_103738664	1/1	a0001	234	449	95	82	206	18	46	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	a0002	234	3	0	3	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	a0003	234	2	2	0	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	a0004	234	2	0	0	2	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	a0005	234	1	1	0	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	a0006	234	1	0	1	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE26_chr14_67741522_67821590	0/1	a0001	2539	145	49	28	46	4	17	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0002	2539	27	2	15	0	5	5	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0003	2539	19	6	0	13	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	1/0	a0004	2539	17	7	6	2	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0005	2539	16	0	0	16	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0006	2539	11	10	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0007	2539	10	8	1	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0008	2539	7	0	6	0	1	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0009	2539	4	3	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0010	2539	4	0	2	2	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0011	2539	3	3	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0012	2539	2	0	0	0	0	2	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0013	2539	2	0	2	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0014	2539	2	0	1	0	1	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0015	2539	2	1	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0016	78	1	0	0	0	1	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0017	2539	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0018	2539	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0019	2539	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0020	508	1	0	0	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0021	2539	1	0	0	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0022	2539	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0023	2539	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0024	2539	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0025	2539	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0026	2539	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0027	2539	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590