JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZFYVE26_chr14_67741522_67821590	0/0	a0028	2539	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0029	2539	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0030	2539	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0031	2539	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0032	2539	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0033	2539	1	0	0	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	a0034	2539	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE27_chr10_97732128_97765895	0/1	a0001	411	238	77	33	87	9	31	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	1/0	a0002	411	134	11	24	83	4	11	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	a0003	411	18	2	7	8	1	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	a0004	411	6	6	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	a0005	411	2	0	0	2	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	a0006	411	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	a0007	411	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE28_chr4_2264597_2423645	0/0	a0001	887	170	45	29	61	7	28	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	1/0	a0002	887	75	20	15	31	1	7	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0003	887	13	6	5	0	0	2	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0004	887	7	1	3	0	2	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0005	887	3	2	0	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/1	a0006	887	3	1	1	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0007	887	3	3	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0008	887	2	0	0	2	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0009	887	2	2	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0010	887	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0011	887	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0012	887	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0013	887	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0014	887	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0015	887	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0016	887	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0017	887	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0018	887	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0019	887	1	0	0	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0020	887	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	a0021	887	1	0	1	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE9_chr1_52137089_52351634	1/1	a0001	1425	166	77	23	50	3	11	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0002	1425	12	2	2	2	1	5	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0003	1425	8	0	0	7	0	1	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0004	1425	6	0	0	6	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0005	1425	2	2	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0006	1425	2	2	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0007	1425	2	2	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0008	1425	1	0	0	0	0	1	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0009	1425	1	0	0	0	0	1	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0010	1425	1	0	0	0	0	1	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0011	1425	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0012	1425	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0013	1425	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0014	1425	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	a0015	1425	1	0	1	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634