JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZGRF1_chr4_112534339_112641909	0/0	a0021	2104	1	0	1	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0022	2104	1	0	1	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0023	2104	1	0	0	1	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	a0024	2104	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZHX1_chr8_123243456_123279286	1/1	a0001	873	267	83	53	91	4	34	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	a0002	873	1	0	1	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	a0003	873	1	1	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	a0004	873	1	0	0	1	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX2_chr8_122776655_122979510	0/0	a0001	837	228	87	43	60	14	24	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0002	837	42	0	4	33	0	5	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0003	837	5	5	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0004	837	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0005	837	1	0	0	0	0	1	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0006	837	1	0	1	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0007	837	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0008	837	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0009	837	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0010	837	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0011	832	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	a0012	837	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX3_chr20_41173455_41322731	1/0	a0001	956	339	78	53	170	9	28	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	a0002	956	12	0	6	1	3	2	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	a0003	956	4	3	1	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/1	a0004	956	3	0	0	0	0	2	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	a0005	956	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	a0006	956	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZIC1_chr3_147404365_147421719	1/1	a0001	447	359	80	67	162	14	34	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	a0002	447	1	0	1	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC2_chr13_99976784_99991765	1/1	a0001	532	419	89	76	191	18	43	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	a0002	533	25	7	4	11	0	3	copy fasta	ZIC2	chr13	99976784	99991765
ZIC3_chrX_137561127_137577102	1/1	a0001	467	299	69	60	127	9	32	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	a0002	467	2	0	0	0	0	2	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	a0003	467	1	1	0	0	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	a0004	469	1	0	0	0	1	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	a0005	460	1	0	0	0	1	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	a0006	467	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	a0007	467	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC4_chr3_147381046_147411543	1/1	a0001	391	351	76	67	153	17	36	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	a0002	391	8	0	3	5	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	a0003	391	2	2	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	a0004	391	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	a0005	391	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	a0006	391	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	a0007	391	1	0	1	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	a0008	391	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	a0009	391	1	0	1	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	a0010	405	1	0	0	0	1	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC5_chr13_99957964_99976767	1/1	a0001	639	180	23	39	86	11	19	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0002	638	103	43	15	30	4	11	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0003	270	58	14	13	21	1	9	copy fasta	ZIC5	chr13	99957964	99976767