JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZIC5_chr13_99957964_99976767	0/0	a0004	639	14	0	0	14	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0005	638	9	9	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0006	636	8	0	0	8	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0007	640	6	2	0	3	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0008	638	5	4	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0009	641	5	0	1	4	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0010	270	5	0	0	4	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0011	641	3	0	0	3	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0012	634	2	0	0	1	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0013	639	2	0	0	2	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0014	638	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0015	639	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0016	270	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0017	639	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0018	639	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0019	638	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0020	633	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0021	639	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0022	639	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	a0023	624	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIK1_chr19_57579145_57598890	1/1	a0001	487	429	90	77	203	12	45	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	a0002	487	2	0	0	2	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	a0003	487	2	2	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	a0004	487	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	a0005	487	1	0	1	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	a0006	487	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	a0007	487	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	a0008	487	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	a0009	487	1	0	0	0	0	1	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	a0010	487	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIM2_chr19_56769547_56845726	1/1	a0001	558	322	74	71	120	15	40	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0002	558	24	0	0	24	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0003	558	4	4	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0004	558	3	3	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0005	558	3	3	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0006	558	2	0	0	2	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0007	558	2	0	0	0	0	2	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0008	558	2	0	0	2	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0009	558	2	0	2	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0010	558	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0011	558	1	0	1	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0012	558	1	1	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0013	558	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0014	558	1	1	0	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	a0015	558	1	0	0	0	1	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM3_chr19_57129096_57150202	0/0	a0001	472	107	25	12	69	0	1	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0002	472	81	16	23	15	5	22	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	1/1	a0003	472	77	24	18	16	5	12	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0004	472	72	1	15	48	4	4	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0005	472	48	9	5	30	1	3	copy fasta	ZIM3	chr19	57129096	57150202