JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C10orf90_chr10_126419997_126675693	0/0	a0009	796	1	1	0	0	0	0	copy fasta	C10orf90	chr10	126419997	126675693
C10orf90_chr10_126419997_126675693	0/0	a0010	796	1	1	0	0	0	0	copy fasta	C10orf90	chr10	126419997	126675693
C10orf90_chr10_126419997_126675693	0/0	a0011	796	1	0	0	0	0	1	copy fasta	C10orf90	chr10	126419997	126675693
C10orf90_chr10_126419997_126675693	0/0	a0012	796	1	0	1	0	0	0	copy fasta	C10orf90	chr10	126419997	126675693
C10orf90_chr10_126419997_126675693	0/0	a0013	796	1	0	0	1	0	0	copy fasta	C10orf90	chr10	126419997	126675693
C10orf90_chr10_126419997_126675693	0/0	a0014	796	1	1	0	0	0	0	copy fasta	C10orf90	chr10	126419997	126675693
C10orf90_chr10_126419997_126675693	0/0	a0015	796	1	0	0	1	0	0	copy fasta	C10orf90	chr10	126419997	126675693
C10orf90_chr10_126419997_126675693	0/0	a0016	796	1	0	0	1	0	0	copy fasta	C10orf90	chr10	126419997	126675693
C10orf95_chr10_102444837_102456543	0/0	a0000	0	1	1	0	0	0	0	copy fasta	C10orf95	chr10	102444837	102456543
C10orf95_chr10_102444837_102456543	1/1	a0001	213	291	61	54	133	13	28	copy fasta	C10orf95	chr10	102444837	102456543
C10orf95_chr10_102444837_102456543	0/0	a0002	213	151	33	24	71	3	20	copy fasta	C10orf95	chr10	102444837	102456543
C10orf95_chr10_102444837_102456543	0/0	a0003	213	3	0	0	3	0	0	copy fasta	C10orf95	chr10	102444837	102456543
C10orf95_chr10_102444837_102456543	0/0	a0004	213	1	0	0	1	0	0	copy fasta	C10orf95	chr10	102444837	102456543
C10orf95_chr10_102444837_102456543	0/0	a0005	213	1	1	0	0	0	0	copy fasta	C10orf95	chr10	102444837	102456543
C10orf95_chr10_102444837_102456543	0/0	a0006	213	1	1	0	0	0	0	copy fasta	C10orf95	chr10	102444837	102456543
C10orf95_chr10_102444837_102456543	0/0	a0007	213	1	0	0	1	0	0	copy fasta	C10orf95	chr10	102444837	102456543
C10orf95_chr10_102444837_102456543	0/0	a0008	213	1	1	0	0	0	0	copy fasta	C10orf95	chr10	102444837	102456543
C10orf95_chr10_102444837_102456543	0/0	a0009	213	1	0	0	1	0	0	copy fasta	C10orf95	chr10	102444837	102456543
C11orf16_chr11_8915076_8937947	0/0	a0000	0	12	10	2	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0001	467	134	23	8	86	2	15	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/1	a0002	467	113	9	25	59	8	11	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0003	467	75	9	17	26	6	17	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	1/0	a0004	467	27	21	5	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0005	467	20	4	2	12	0	2	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0006	467	10	10	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0007	467	6	6	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0008	467	5	0	2	0	0	3	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0009	467	2	2	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0010	191	1	0	1	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0011	467	1	1	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0012	467	1	1	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0013	467	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0014	467	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	a0015	467	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf21_chr11_2290628_2306918	0/0	a0001	132	230	74	51	69	12	24	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	1/0	a0002	132	118	4	13	95	1	4	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/1	a0003	132	71	10	20	17	5	18	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	a0004	22	6	6	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	a0005	132	1	0	0	1	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf24_chr11_68256338_68276973	0/0	a0001	449	154	29	17	86	8	14	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	a0002	449	142	16	29	69	4	24	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	1/1	a0003	449	98	43	22	21	4	6	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	a0004	449	2	1	1	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	a0005	449	1	1	0	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	a0006	449	1	1	0	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	a0007	449	1	1	0	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	a0008	449	1	0	1	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf42_chr11_6200557_6216135	0/1	a0001	333	275	36	57	146	11	24	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	1/0	a0002	333	159	54	23	55	5	21	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	a0003	333	3	0	0	3	0	0	copy fasta	C11orf42	chr11	6200557	6216135