JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZIM3_chr19_57129096_57150202	0/0	a0006	472	12	11	1	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0007	472	4	0	0	4	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0008	472	3	0	3	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0009	472	2	2	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0010	472	2	2	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0011	437	2	0	0	1	1	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0012	472	2	0	0	0	0	2	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0013	472	1	0	1	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0014	472	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0015	472	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0016	472	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0017	472	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	a0018	472	1	0	0	1	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZKSCAN1_chr7_100010596_100046689	1/1	a0001	563	394	92	72	165	16	47	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	a0002	563	2	0	0	0	2	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	a0003	563	1	0	0	0	0	1	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	a0004	563	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN2_chr16_25231001_25262845	1/1	a0001	967	196	49	43	76	6	20	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0002	967	80	13	9	46	2	10	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0003	967	45	2	6	30	2	5	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0004	967	42	19	10	10	1	2	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0005	967	7	5	2	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0006	967	4	4	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0007	967	3	3	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0008	967	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0009	967	1	0	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0010	967	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0011	967	1	0	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0012	967	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0013	967	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0014	967	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0015	967	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0016	967	1	0	0	0	1	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0017	967	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0018	967	1	0	0	0	0	1	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0019	967	1	0	0	0	0	1	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	a0020	967	1	0	0	0	0	1	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN3_chr6_28344947_28374172	1/0	a0001	538	160	18	28	84	8	21	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/1	a0002	538	123	42	25	37	6	12	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	a0003	538	55	3	9	41	0	2	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	a0004	538	51	15	7	28	0	1	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	a0005	538	21	18	1	0	0	2	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	a0006	278	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	a0007	538	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	a0008	538	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	a0009	538	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN4_chr6_28236697_28257269	1/1	a0001	545	334	60	58	169	13	32	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	a0002	545	62	16	13	29	1	3	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	a0003	545	16	15	1	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	a0004	545	5	0	0	5	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269