JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZMIZ1_chr10_79063966_79321519	0/0	a0002	1067	1	0	0	1	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	a0003	1067	1	0	0	1	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	a0004	1067	1	1	0	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	a0005	1067	1	0	0	1	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	a0006	1067	1	0	1	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ2_chr7_44743847_44774881	1/1	a0001	920	302	80	63	114	10	33	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0002	920	52	1	13	27	4	7	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0003	920	4	3	1	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0004	920	3	0	3	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0005	920	2	0	0	0	2	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0006	920	2	0	2	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0007	920	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0008	920	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0009	920	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0010	920	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	a0011	920	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMPSTE24_chr1_40253236_40299180	1/1	a0001	475	392	95	50	181	16	48	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	a0002	475	1	1	0	0	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	a0003	475	1	0	0	1	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMYM1_chr1_35074385_35120859	0/0	a0001	1142	231	35	33	130	6	27	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	1/1	a0002	1142	98	27	17	46	1	5	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0003	1141	14	13	1	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0004	1142	9	6	3	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0005	1142	8	6	2	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0006	1142	3	3	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0007	1142	2	0	0	0	2	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0008	1142	2	2	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0009	1142	1	0	0	0	1	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0010	1141	1	1	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0011	1142	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0012	1142	1	1	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0013	1142	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0014	1142	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	a0015	1142	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM2_chr13_19953727_20094115	1/1	a0001	1377	280	77	47	108	14	32	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	a0002	1377	2	1	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	a0003	1377	1	0	0	0	0	1	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	a0004	1377	1	0	0	0	0	1	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	a0005	1377	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	a0006	1377	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM3_chrX_71234624_71259140	1/1	a0001	1370	286	70	60	115	13	26	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0002	87	2	0	0	2	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0003	1370	2	0	0	0	0	2	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0004	111	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0005	111	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0006	140	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0007	157	1	0	0	0	0	1	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0008	633	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0009	837	1	0	1	0	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0010	1370	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140