JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZMYM3_chrX_71234624_71259140	0/0	a0011	1370	1	0	0	0	0	1	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0012	1370	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	a0013	1370	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM4_chr1_35263709_35427058	1/1	a0001	1548	294	92	43	131	6	20	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	a0002	1548	1	0	1	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	a0003	1164	1	0	0	1	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	a0004	1548	1	0	0	0	0	1	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	a0005	1548	1	0	0	0	0	1	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM5_chr13_19818482_19868649	0/0	a0001	669	172	31	48	62	10	21	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	1/1	a0002	669	68	41	15	1	3	6	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0003	669	41	18	4	14	2	3	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0004	669	3	0	0	2	0	1	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0005	48	1	0	0	0	1	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0006	669	1	0	0	1	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0007	669	1	0	0	0	0	1	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0008	669	1	0	1	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0009	669	1	0	1	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0010	669	1	1	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0011	669	1	0	1	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0012	669	1	1	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0013	669	1	0	0	1	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0014	669	1	0	0	1	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0015	669	1	1	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	a0016	669	1	1	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM6_chr1_34981165_35036945	1/1	a0001	1325	282	80	30	143	6	21	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	a0002	1325	21	19	2	0	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	a0003	1325	2	0	0	0	0	2	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	a0004	95	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	a0005	1325	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	a0006	1325	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	a0007	1325	1	1	0	0	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	a0008	1325	1	0	0	0	0	1	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYND10_chr3_50336112_50350732	1/1	a0001	440	354	83	68	152	14	35	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	a0002	440	3	3	0	0	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	a0003	440	2	2	0	0	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	a0004	440	2	0	0	2	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	a0005	440	1	0	0	0	0	1	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND11_chr10_130455_259637	1/1	a0001	602	342	82	62	146	14	36	copy fasta	ZMYND11	chr10	130455	259637
ZMYND12_chr1_42425329_42461022	0/0	a0001	365	248	61	45	98	9	35	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	1/1	a0002	365	136	26	28	66	3	11	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	a0003	365	2	0	0	2	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	a0004	1	1	1	0	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	a0005	365	1	1	0	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	a0006	365	1	1	0	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	a0007	365	1	0	1	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND15_chr17_4734833_4751113	1/1	a0001	742	437	89	80	202	16	48	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	a0002	742	7	7	0	0	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	a0003	742	5	0	0	5	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	a0004	742	2	0	0	0	0	2	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	a0005	742	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113