JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZMYND15_chr17_4734833_4751113	0/0	a0006	742	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	a0007	742	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	a0008	742	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	a0009	742	1	1	0	0	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	a0010	742	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	a0011	742	1	1	0	0	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND19_chr9_137577081_137595512	1/1	a0001	227	327	96	70	103	16	40	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	a0002	227	1	0	0	1	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND8_chr20_47204214_47361699	1/1	a0001	1234	110	24	28	34	8	14	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	a0002	1234	86	54	14	12	0	6	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	a0003	1234	5	5	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	a0004	1234	2	0	0	2	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	a0005	1234	2	0	1	1	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	a0006	1234	1	0	0	1	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	a0007	1234	1	0	1	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	a0008	1234	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZNF100_chr19_21717771_21772579	0/0	a0001	542	158	50	31	62	6	9	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/1	a0002	542	138	33	26	62	4	12	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0003	542	28	0	0	24	0	4	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0004	542	23	0	5	9	2	7	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0005	542	5	4	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0006	329	3	0	0	3	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0007	67	1	0	0	0	1	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0008	374	1	0	0	0	1	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0009	542	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0010	542	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0011	542	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0012	542	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0013	542	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0014	542	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0015	542	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	a0016	542	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF101_chr19_19663839_19688506	1/1	a0001	436	325	93	55	116	12	47	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	a0002	436	32	0	8	21	0	3	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	a0003	436	3	0	0	1	2	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	a0004	436	1	1	0	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	a0005	436	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	a0006	436	1	0	1	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	a0007	436	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF106_chr15_42407823_42496141	1/1	a0001	1906	105	20	26	43	2	12	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0002	1906	89	35	16	33	0	5	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0003	1906	20	4	8	0	2	6	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0004	1906	7	2	3	0	1	1	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0005	1906	7	7	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0006	1906	4	4	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0007	1906	4	4	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0008	1906	4	4	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0009	1906	4	4	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0010	1906	3	3	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0011	1906	2	2	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141