JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF106_chr15_42407823_42496141	0/0	a0012	1906	2	0	0	0	0	2	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0013	1906	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0014	1906	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0015	1906	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0016	1906	1	0	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0017	1906	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0018	1906	1	0	0	1	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0019	1906	1	0	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0020	1906	1	0	0	0	1	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0021	1906	1	0	0	1	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0022	1906	1	0	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0023	1906	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0024	1906	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	a0025	1906	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF107_chr7_64661133_64716577	1/1	a0001	852	349	57	64	183	11	32	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	a0002	853	53	33	3	17	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	a0003	852	8	0	5	0	1	2	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	a0004	852	5	5	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	a0005	852	2	0	0	2	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	a0006	852	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	a0007	852	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	a0008	712	1	0	0	1	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	a0009	852	1	0	0	1	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	a0010	852	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF10_chr12_133125627_133164465	1/1	a0001	573	305	74	66	112	12	39	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	a0002	573	23	20	2	0	0	1	copy fasta	ZNF10	chr12	133125627	133164465
ZNF112_chr19_44321555_44361680	0/0	a0001	907	159	2	34	89	10	24	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	1/0	a0002	907	108	21	18	52	2	14	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/1	a0003	907	106	33	25	43	2	2	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	a0004	907	21	18	0	1	2	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	a0005	907	8	8	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	a0006	907	2	2	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	a0007	907	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	a0008	190	1	0	0	1	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	a0009	907	1	0	1	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	a0010	907	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	a0011	907	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	a0012	907	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF114_chr19_48265081_48292608	0/0	a0000	0	1	0	1	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	1/1	a0001	417	410	83	76	191	10	48	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	a0002	417	10	10	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	a0003	417	4	4	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	a0004	417	1	1	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	a0005	417	1	0	0	0	0	1	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	a0006	417	1	0	1	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	a0007	417	1	0	0	0	0	1	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	a0008	417	1	0	0	1	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF117_chr7_64966772_64996036	0/1	a0001	427	207	26	51	98	8	23	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	a0002	427	167	39	15	84	10	19	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	1/0	a0003	483	52	17	5	29	0	0	copy fasta	ZNF117	chr7	64966772	64996036