JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF117_chr7_64966772_64996036	0/0	a0004	511	7	5	2	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	a0005	483	4	3	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	a0006	483	2	2	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	a0007	427	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	a0008	427	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	a0009	427	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	a0010	427	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	a0011	427	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF121_chr19_9555329_9589504	1/1	a0001	390	357	94	64	147	12	38	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	a0002	390	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF124_chr1_247149989_247177020	1/1	a0001	351	397	84	78	171	16	46	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	a0002	351	1	0	0	1	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF12_chr7_6683433_6711947	1/1	a0001	697	358	79	67	156	12	42	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	a0002	697	17	15	2	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	a0003	697	4	0	4	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	a0004	697	2	2	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	a0005	697	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	a0006	697	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	a0007	697	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	a0008	697	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	a0009	697	1	0	1	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF131_chr5_43115914_43181322	1/1	a0001	623	322	72	56	130	14	48	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	a0002	623	7	7	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	a0003	623	3	0	0	3	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	a0004	623	2	2	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	a0005	623	1	1	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	a0006	623	1	0	0	1	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF132_chr19_58427814_58445153	1/0	a0001	706	233	19	45	135	10	23	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/1	a0002	706	138	58	20	43	6	10	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	a0003	706	42	9	13	9	2	9	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	a0004	706	5	0	0	5	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	a0005	706	3	3	0	0	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	a0006	706	1	0	0	1	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	a0007	706	1	0	0	1	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	a0008	706	1	1	0	0	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF133_chr20_18283527_18321996	0/1	a0001	654	316	87	56	124	11	37	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	a0002	654	53	11	6	30	3	3	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	a0003	654	1	0	0	1	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	a0004	654	1	0	0	1	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	1/0	a0005	654	1	0	0	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF134_chr19_57609242_57629724	1/1	a0001	427	330	75	56	145	13	39	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	a0002	427	47	11	3	28	1	4	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	a0003	427	35	0	6	25	2	2	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	a0004	427	7	7	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	a0005	427	1	0	0	0	0	1	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	a0006	427	1	0	1	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	a0007	427	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	a0008	127	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	a0009	427	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF135_chr19_58054282_58074755	0/1	a0001	658	316	81	66	129	13	26	copy fasta	ZNF135	chr19	58054282	58074755