JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF142_chr2_218628329_218664623	0/0	a0012	1887	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0013	1887	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0014	1887	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0015	1887	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0016	1887	1	0	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0017	1887	1	0	0	0	1	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF143_chr11_9456012_9533524	0/1	a0001	638	265	73	57	89	11	34	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	1/0	a0002	638	58	0	9	39	1	8	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	a0003	638	5	5	0	0	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	a0004	638	2	0	2	0	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	a0005	638	2	0	0	2	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF146_chr19_36210106_36243768	1/1	a0001	292	248	59	49	104	12	22	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	a0002	292	141	33	27	58	4	19	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	a0003	292	1	0	0	0	0	1	copy fasta	ZNF146	chr19	36210106	36243768
ZNF148_chr3_125220669_125380325	1/1	a0001	794	332	84	56	138	14	38	copy fasta	ZNF148	chr3	125220669	125380325
ZNF14_chr19_19705472_19738112	1/1	a0001	642	311	91	56	115	12	35	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	a0002	642	80	1	13	52	4	10	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	a0003	642	1	1	0	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	a0004	642	1	1	0	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	a0005	642	1	0	1	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	a0006	642	1	0	0	1	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	a0007	642	1	0	0	1	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	a0008	642	1	0	0	1	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	a0009	642	1	0	0	0	0	1	copy fasta	ZNF14	chr19	19705472	19738112
ZNF154_chr19_57691275_57714204	1/1	a0001	437	258	67	47	99	10	33	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0002	437	117	3	19	86	3	6	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0003	437	53	15	6	25	4	3	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0004	437	6	0	4	0	1	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0005	437	2	0	1	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0006	437	2	1	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0007	191	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0008	437	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0009	278	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0010	437	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0011	437	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0012	437	1	0	0	0	0	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0013	353	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	a0014	437	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF155_chr19_43979188_44003326	0/1	a0001	538	379	54	79	184	16	45	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	a0002	538	40	8	2	28	0	2	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	a0003	538	18	17	1	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	1/0	a0004	538	12	11	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	a0005	538	6	0	1	5	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	a0006	538	4	3	0	0	0	1	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	a0007	538	1	0	0	1	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	a0008	538	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	a0009	538	1	0	1	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	a0010	538	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	a0011	538	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF157_chrX_47365578_47419498	1/1	a0001	506	289	67	46	127	13	34	copy fasta	ZNF157	chrX	47365578	47419498