JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF16_chr8_144925358_144955880	0/0	a0015	682	1	0	0	0	0	1	copy fasta	ZNF16	chr8	144925358	144955880
ZNF174_chr16_3396215_3414364	1/1	a0001	407	358	98	72	126	18	42	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	a0002	407	2	0	2	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	a0003	191	1	0	1	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	a0004	407	1	1	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	a0005	407	1	0	1	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	a0006	407	1	1	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF175_chr19_51566283_51597510	1/1	a0001	711	287	51	65	117	12	40	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0002	711	69	32	7	27	0	3	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0003	711	16	0	13	0	0	3	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0004	711	14	0	1	13	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0005	60	8	0	0	8	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0006	711	8	8	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0007	711	2	2	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0008	711	2	0	0	2	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0009	711	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0010	711	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0011	711	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0012	711	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0013	711	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0014	711	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0015	711	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	a0016	711	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF177_chr19_9358013_9387617	0/1	a0001	481	219	58	46	84	9	21	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	1/0	a0002	481	173	27	29	96	7	13	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0003	481	10	7	1	2	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0004	481	3	0	0	0	0	3	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0005	481	2	1	0	0	0	1	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0006	481	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0007	481	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0008	481	1	0	0	1	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0009	481	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0010	481	1	0	0	1	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0011	481	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	a0012	481	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF17_chr19_57406161_57426934	1/1	a0001	664	299	72	56	128	11	30	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	a0002	664	82	1	16	51	2	12	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	a0003	664	19	17	2	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	a0004	664	1	1	0	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	a0005	664	1	0	0	1	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	a0006	636	1	0	0	0	1	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	a0007	664	1	1	0	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF180_chr19_44469443_44505522	0/1	a0001	665	235	28	44	118	9	35	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	1/0	a0002	665	107	16	16	60	7	7	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0003	665	70	42	7	19	2	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0004	665	5	1	1	3	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0005	665	2	2	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0006	665	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0007	665	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0008	665	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522