JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF180_chr19_44469443_44505522	0/0	a0009	665	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0010	665	1	0	0	0	0	1	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0011	665	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0012	665	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0013	665	1	0	0	0	0	1	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	a0014	665	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF181_chr19_34729243_34750378	1/0	a0001	571	428	86	72	214	16	39	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	a0002	571	5	0	4	0	1	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	a0003	571	4	0	0	4	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/1	a0004	571	4	0	1	0	1	1	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	a0005	571	2	0	0	2	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	a0006	571	2	2	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	a0007	571	2	1	1	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	a0008	571	1	1	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF182_chrX_47969851_48008989	1/1	a0001	620	261	73	46	101	7	32	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	a0002	620	6	0	0	6	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	a0003	620	2	2	0	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	a0004	620	1	1	0	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF184_chr6_27445747_27478105	0/1	a0001	751	219	51	34	99	5	29	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	1/0	a0002	751	171	41	38	75	5	11	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	a0003	751	2	0	2	0	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	a0004	751	1	0	0	1	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	a0005	751	1	0	0	1	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF185_chrX_152893067_152978474	1/1	a0001	722	197	43	40	84	7	21	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0002	722	52	31	5	7	0	9	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0003	721	2	0	0	2	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0004	229	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0005	722	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0006	288	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0007	268	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0008	490	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0009	118	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0010	94	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0011	722	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	a0012	23	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF189_chr9_101393851_101415654	1/1	a0001	626	437	88	77	210	15	45	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	a0002	626	4	3	1	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	a0003	626	2	2	0	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	a0004	626	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	a0005	626	1	1	0	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	a0006	626	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	a0007	626	1	0	0	0	0	1	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	a0008	626	1	0	0	0	1	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF18_chr17_11972439_12002475	1/1	a0001	549	382	89	64	174	13	40	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	a0002	549	6	6	0	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	a0003	549	3	0	3	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	a0004	549	1	0	0	0	1	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	a0005	549	1	0	1	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	a0006	549	1	0	0	1	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	a0007	549	1	1	0	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475