JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF18_chr17_11972439_12002475	0/0	a0008	549	1	0	0	1	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF195_chr11_3352927_3384146	1/1	a0001	629	248	69	59	83	8	27	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	a0002	629	108	15	5	77	0	11	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	a0003	629	8	8	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	a0004	629	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	a0005	629	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF197_chr3_44620036_44653471	1/1	a0001	1029	309	94	66	95	16	36	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	a0002	1029	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	a0003	1029	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	a0004	1029	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF19_chr16_71468583_71494324	0/1	a0001	458	257	57	43	114	9	33	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	1/0	a0002	458	143	35	29	68	5	5	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	a0003	458	2	0	0	2	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	a0004	458	2	2	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	a0005	458	2	0	0	2	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF200_chr16_3217325_3240158	1/1	a0001	395	356	76	63	166	13	36	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	a0002	395	23	20	3	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	a0003	395	4	0	3	0	1	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	a0004	395	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	a0005	355	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	a0006	395	1	0	0	0	0	1	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	a0007	395	1	0	1	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	a0008	395	1	0	0	0	0	1	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	a0009	395	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	a0010	395	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF202_chr11_123718914_123746660	0/1	a0001	648	271	69	55	102	11	33	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	1/0	a0002	648	154	16	23	100	3	11	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	a0003	648	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	a0004	648	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	a0005	648	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF205_chr16_3107586_3125517	1/0	a0001	554	274	47	47	149	7	23	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/1	a0002	554	139	51	26	42	5	14	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	a0003	554	1	0	0	1	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	a0004	554	1	0	0	1	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	a0005	554	1	0	0	0	0	1	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	a0006	554	1	0	0	0	0	1	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	a0007	554	1	0	1	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	a0008	554	1	0	0	1	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	a0009	554	1	0	0	0	0	1	copy fasta	ZNF205	chr16	3107586	3125517
ZNF207_chr17_32345157_32386885	1/1	a0001	494	273	95	64	62	8	42	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	a0002	494	22	1	2	14	3	2	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	a0003	121	1	0	0	0	1	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF208_chr19_21961095_22015943	0/1	a0001	1280	99	7	21	55	11	4	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	1/0	a0002	1280	92	5	12	53	2	19	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0003	1252	79	17	12	42	1	7	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0004	1252	48	17	8	16	0	7	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0005	1280	10	8	1	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0006	1280	8	8	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0007	1280	5	5	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0008	1280	5	3	2	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943