JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF208_chr19_21961095_22015943	0/0	a0009	1280	5	0	0	5	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0010	1280	4	4	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0011	1308	4	4	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0012	1280	4	0	0	4	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0013	1280	4	3	0	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0014	1252	3	3	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0015	1280	3	3	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0016	1252	2	0	0	2	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0017	1280	2	0	2	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0018	1672	2	0	0	2	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0019	1280	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0020	1280	2	0	0	0	0	2	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0021	1280	2	0	2	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0022	832	2	0	2	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0023	1280	2	0	0	2	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0024	1281	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0025	1196	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0026	1280	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0027	692	1	0	0	0	0	1	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0028	1280	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0029	916	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0030	1280	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0031	1280	1	0	0	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0032	1280	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0033	1280	1	0	0	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0034	1476	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0035	1280	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0036	1280	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	a0037	1281	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF20_chr19_12126350_12145350	1/1	a0001	532	345	80	72	132	16	43	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	a0002	532	10	10	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	a0003	532	2	0	1	0	0	1	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	a0004	532	2	1	0	1	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	a0005	532	1	1	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	a0006	532	1	1	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	a0007	532	1	0	1	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	a0008	532	1	1	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	a0009	532	1	0	0	1	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF211_chr19_57628168_57649041	1/1	a0001	577	251	65	44	97	13	30	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0002	557	106	20	10	63	5	8	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0003	577	3	1	2	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0004	557	2	0	0	0	0	2	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0005	557	2	0	0	0	0	2	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0006	577	2	0	0	2	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0007	557	1	1	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0008	557	1	0	0	0	0	1	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0009	577	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0010	577	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0011	577	1	0	0	0	0	1	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	a0012	577	1	1	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041