JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF212_chr7_149234651_149260606	1/1	a0001	495	373	90	68	171	12	30	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	a0002	495	27	1	9	2	3	12	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	a0003	495	3	0	2	0	1	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	a0004	495	1	1	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	a0005	495	1	0	1	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	a0006	495	1	0	0	1	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF213_chr16_3130029_3147804	1/1	a0001	459	432	96	78	200	14	42	copy fasta	ZNF213	chr16	3130029	3147804
ZNF214_chr11_6992085_7025346	0/1	a0001	606	161	31	30	73	8	18	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0002	606	67	6	5	46	2	8	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0003	606	48	26	10	5	4	3	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0004	606	44	0	3	32	2	7	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	1/0	a0005	606	20	11	4	0	0	4	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0006	606	7	7	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0007	606	7	7	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0008	606	5	1	4	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0009	606	4	2	2	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0010	606	1	0	1	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0011	606	1	1	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	a0012	606	1	0	1	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF215_chr11_6921426_6963047	1/0	a0001	517	231	48	46	91	9	36	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0002	517	89	6	19	55	4	5	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/1	a0003	517	83	37	6	33	3	3	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0004	517	20	0	0	20	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0005	517	15	0	0	14	0	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0006	517	6	0	0	6	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0007	517	5	1	0	4	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0008	517	3	2	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0009	517	3	0	0	3	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0010	517	1	0	0	1	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0011	517	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0012	517	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0013	517	1	0	0	1	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	a0014	517	1	0	0	0	0	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF217_chr20_53562071_53598839	1/0	a0001	1048	325	62	55	156	13	38	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0002	1048	30	0	2	23	2	3	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0003	1048	19	0	9	4	0	6	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0004	1048	17	17	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0005	1048	6	6	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0006	1048	5	5	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/1	a0007	1048	3	0	1	0	1	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0008	1048	2	0	0	0	0	2	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0009	1048	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0010	1048	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0011	1048	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0012	1048	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0013	1048	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0014	1048	1	0	1	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	a0015	1048	1	0	0	0	0	1	copy fasta	ZNF217	chr20	53562071	53598839
ZNF219_chr14_21085077_21103655	1/0	a0001	722	304	63	52	138	11	39	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/1	a0002	720	70	17	22	20	1	9	copy fasta	ZNF219	chr14	21085077	21103655