JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF219_chr14_21085077_21103655	0/0	a0003	722	12	12	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	a0004	722	6	0	0	6	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	a0005	722	1	0	0	1	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	a0006	722	1	0	0	1	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF221_chr19_43946228_43972709	0/1	a0001	617	318	45	72	150	13	37	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0002	617	49	2	4	37	1	5	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0003	617	28	21	1	0	2	4	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0004	617	10	10	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0005	617	10	7	2	1	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0006	617	4	4	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0007	617	4	4	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0008	617	3	3	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0009	617	1	1	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0010	617	1	1	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	1/0	a0011	617	1	0	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0012	617	1	1	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0013	617	1	0	1	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0014	617	1	0	0	1	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0015	617	1	1	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	a0016	617	1	0	0	1	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF222_chr19_44020379_44038110	1/0	a0001	491	228	45	45	117	5	15	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/1	a0002	491	145	16	29	74	8	17	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0003	491	20	19	1	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0004	491	10	9	1	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0005	491	6	0	0	6	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0006	491	4	4	0	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0007	491	2	2	0	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0008	491	1	1	0	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0009	491	1	0	0	1	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0010	491	1	0	1	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0011	491	1	0	1	0	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0012	491	1	0	0	1	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0013	491	1	0	0	1	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	a0014	3	1	0	0	0	1	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF223_chr19_44047036_44072999	1/0	a0001	482	250	61	45	119	9	15	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/1	a0002	482	149	15	27	75	8	23	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	a0003	482	13	7	1	1	1	3	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	a0004	482	10	10	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	a0005	289	6	0	0	6	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	a0006	482	1	0	1	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	a0007	482	1	1	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	a0008	482	1	1	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	a0009	482	1	1	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	a0010	482	1	0	0	0	0	1	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	a0011	482	1	0	0	1	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF224_chr19_44089361_44114826	0/1	a0001	707	170	37	27	78	9	18	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	1/0	a0002	707	102	7	19	62	3	10	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0003	707	95	43	17	30	1	4	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0004	707	29	0	3	20	2	4	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0005	707	7	2	0	5	0	0	copy fasta	ZNF224	chr19	44089361	44114826