JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF224_chr19_44089361_44114826	0/0	a0006	707	4	0	0	4	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0007	707	2	2	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0008	707	2	0	2	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0009	707	1	0	1	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0010	707	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0011	384	1	0	1	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0012	707	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0013	707	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0014	735	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0015	707	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0016	707	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0017	707	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0018	707	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0019	490	1	0	0	0	1	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0020	707	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	a0021	707	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF225_chr19_44108399_44139822	1/1	a0001	706	313	69	55	142	13	32	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0002	706	51	6	13	30	0	2	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0003	706	13	8	1	1	1	2	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0004	706	8	0	0	8	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0005	706	4	4	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0006	706	2	2	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0007	706	2	2	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0008	706	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0009	706	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0010	706	1	0	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0011	628	1	0	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0012	706	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0013	706	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0014	706	1	0	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0015	706	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0016	233	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0017	706	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	a0018	706	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF226_chr19_44160100_44182685	1/1	a0001	803	364	70	73	174	10	35	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0002	803	13	13	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0003	779	8	0	0	8	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0004	803	5	5	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0005	803	2	0	2	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0006	803	1	0	0	1	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0007	803	1	1	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0008	803	1	0	0	0	0	1	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0009	803	1	0	0	1	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0010	803	1	0	1	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	a0011	803	1	1	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF227_chr19_44207532_44242268	1/1	a0001	799	382	79	76	179	12	34	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	a0002	799	7	0	0	7	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	a0003	799	6	5	1	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	a0004	799	6	6	0	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	a0005	799	1	0	1	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268