JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF229_chr19_44421254_44453472	1/0	a0001	825	150	61	28	39	7	14	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0002	825	99	7	8	64	3	17	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0003	825	80	14	23	37	2	4	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0004	825	59	0	2	53	2	2	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0005	825	12	0	0	12	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0006	825	4	4	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0007	825	4	0	2	0	1	1	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0008	825	3	1	2	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0009	825	3	3	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0010	825	3	1	2	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0011	685	2	0	0	2	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0012	825	2	0	0	2	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0013	825	2	2	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0014	825	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0015	825	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0016	825	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0017	825	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0018	825	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0019	825	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0020	825	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0021	825	1	0	0	0	1	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0022	825	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	a0023	825	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF22_chr10_44995923_45010326	1/1	a0001	224	428	91	78	195	18	44	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	a0002	224	22	1	0	21	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF230_chr19_43997957_44018924	1/1	a0001	474	318	69	53	141	11	42	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0002	474	55	15	12	23	3	2	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0003	474	39	0	11	26	0	2	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0004	474	4	4	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0005	474	4	4	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0006	474	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0007	474	1	0	0	0	1	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0008	474	1	0	0	0	1	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0009	474	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0010	474	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	a0011	474	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF232_chr17_5100736_5116878	1/1	a0001	444	424	88	78	201	16	39	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	a0002	444	2	2	0	0	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	a0003	438	1	0	0	1	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	a0004	444	1	0	0	1	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	a0005	444	1	0	0	1	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	a0006	444	1	0	0	0	0	1	copy fasta	ZNF232	chr17	5100736	5116878
ZNF233_chr19_44254886_44280317	0/1	a0000	0	140	55	25	55	2	2	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	a0001	670	148	10	30	84	3	21	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	1/0	a0002	670	114	28	20	48	2	15	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	a0003	670	1	0	0	1	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	a0004	670	1	1	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	a0005	670	1	1	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	a0006	670	1	0	0	0	1	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	a0007	670	1	1	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317