JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF233_chr19_44254886_44280317	0/0	a0008	661	1	0	1	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF234_chr19_44136554_44165313	1/0	a0001	700	235	56	47	101	6	24	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/1	a0002	700	145	33	22	72	3	14	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	a0003	700	9	0	0	9	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	a0004	700	5	0	0	5	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	a0005	700	3	3	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	a0006	700	2	0	2	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	a0007	700	1	0	1	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	a0008	700	1	0	0	0	1	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	a0009	700	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF235_chr19_44281348_44310025	1/1	a0001	738	243	76	41	104	4	16	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	a0002	738	148	13	31	76	6	22	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	a0003	738	1	1	0	0	0	0	copy fasta	ZNF235	chr19	44281348	44310025
ZNF236_chr18_76817557_76977901	0/1	a0001	1847	266	69	57	109	7	23	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	1/0	a0002	1847	39	4	4	28	1	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0003	1847	13	0	1	11	1	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0004	1847	7	0	1	4	1	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0005	1847	5	5	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0006	1847	2	2	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0007	1847	2	0	0	2	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0008	1847	1	0	0	0	0	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0009	1847	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0010	1847	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0011	1847	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0012	1847	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0013	1847	1	0	0	0	0	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0014	1847	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0015	1847	1	0	0	0	0	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0016	1847	1	0	0	1	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0017	1847	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0018	1847	1	0	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	a0019	1847	1	0	0	1	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF239_chr10_43551344_43579616	0/0	a0001	458	200	47	42	81	3	27	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	1/1	a0002	458	155	43	31	62	7	10	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	a0003	458	3	3	0	0	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	a0004	458	2	0	0	2	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	a0005	458	2	0	0	2	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	a0006	458	1	0	0	1	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	a0007	458	1	0	0	1	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	a0008	458	1	0	1	0	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	a0009	458	1	0	0	1	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	a0010	458	1	1	0	0	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	a0011	458	1	0	0	0	0	1	copy fasta	ZNF239	chr10	43551344	43579616
ZNF23_chr16_71442597_71467247	0/1	a0001	686	217	82	31	61	10	32	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	1/0	a0002	686	171	2	38	110	5	15	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	a0003	686	21	9	9	2	1	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	a0004	686	2	0	0	2	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	a0005	686	2	0	0	2	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	a0006	686	1	0	0	1	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	a0007	686	1	0	0	0	0	1	copy fasta	ZNF23	chr16	71442597	71467247