JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C11orf91_chr11_33693261_33705826	0/0	a0005	193	1	0	0	1	0	0	copy fasta	C11orf91	chr11	33693261	33705826
C11orf91_chr11_33693261_33705826	0/0	a0006	193	1	0	0	1	0	0	copy fasta	C11orf91	chr11	33693261	33705826
C11orf91_chr11_33693261_33705826	0/0	a0007	193	1	0	1	0	0	0	copy fasta	C11orf91	chr11	33693261	33705826
C11orf96_chr11_43937637_43948878	1/1	a0001	122	406	84	70	193	14	43	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	a0002	122	32	14	4	11	2	1	copy fasta	C11orf96	chr11	43937637	43948878
C11orf97_chr11_94507461_94537123	0/0	a0001	126	194	45	32	94	9	14	copy fasta	C11orf97	chr11	94507461	94537123
C11orf97_chr11_94507461_94537123	1/0	a0002	126	145	13	30	72	4	25	copy fasta	C11orf97	chr11	94507461	94537123
C11orf97_chr11_94507461_94537123	0/1	a0003	126	46	7	2	27	1	8	copy fasta	C11orf97	chr11	94507461	94537123
C11orf97_chr11_94507461_94537123	0/0	a0004	126	25	18	2	5	0	0	copy fasta	C11orf97	chr11	94507461	94537123
C11orf97_chr11_94507461_94537123	0/0	a0005	126	15	12	2	1	0	0	copy fasta	C11orf97	chr11	94507461	94537123
C11orf97_chr11_94507461_94537123	0/0	a0006	126	8	3	3	1	0	1	copy fasta	C11orf97	chr11	94507461	94537123
C11orf97_chr11_94507461_94537123	0/0	a0007	126	1	0	1	0	0	0	copy fasta	C11orf97	chr11	94507461	94537123
C11orf98_chr11_62657817_62670210	1/1	a0001	123	382	94	80	148	16	42	copy fasta	C11orf98	chr11	62657817	62670210
C12orf40_chr12_39621183_39726914	1/1	a0001	652	300	72	51	131	9	35	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0002	652	47	5	10	27	0	5	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0003	652	2	2	0	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0004	652	2	0	0	2	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0005	652	2	2	0	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0006	652	2	2	0	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0007	652	1	0	1	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0008	652	1	1	0	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0009	652	1	0	1	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0010	652	1	0	1	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	a0011	652	1	0	0	0	1	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf42_chr12_103296955_103500968	1/1	a0001	360	128	44	17	56	3	6	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0002	360	84	19	13	42	0	10	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0003	360	25	0	2	16	0	7	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0004	360	12	2	2	3	1	4	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0005	360	4	4	0	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0006	360	2	1	1	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0007	336	1	0	0	0	0	1	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0008	360	1	0	0	1	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0009	360	1	0	1	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0010	360	1	1	0	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0011	360	1	1	0	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0012	360	1	1	0	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	a0013	360	1	1	0	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf43_chr12_120995486_121021487	1/1	a0001	262	408	90	65	196	18	37	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	a0002	262	8	0	7	0	0	1	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	a0003	262	1	0	0	1	0	0	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	a0004	262	1	0	0	1	0	0	copy fasta	C12orf43	chr12	120995486	121021487
C12orf4_chr12_4482735_4543469	1/1	a0001	552	220	86	42	62	4	24	copy fasta	C12orf4	chr12	4482735	4543469
C12orf50_chr12_87975035_88034401	1/1	a0001	414	166	15	43	80	9	17	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	a0002	414	87	58	8	15	0	6	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	a0003	414	6	6	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	a0004	414	4	1	2	0	0	1	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	a0005	414	4	4	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	a0006	414	1	0	1	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	a0007	414	1	0	0	0	1	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	a0008	414	1	1	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401