JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF276_chr16_89716537_89745925	1/0	a0002	614	161	42	42	40	14	22	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0003	614	22	0	0	20	1	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0004	614	8	2	0	4	0	2	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0005	614	5	0	0	5	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0006	614	4	0	0	3	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0007	614	3	0	0	3	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0008	614	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0009	614	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0010	614	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0011	614	1	0	0	0	1	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0012	614	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0013	614	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0014	614	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0015	614	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0016	614	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0017	614	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	a0018	614	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF277_chr7_112201695_112348934	1/1	a0001	450	263	68	61	89	6	37	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	a0002	450	11	8	1	1	0	1	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	a0003	179	2	1	1	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	a0004	450	2	2	0	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	a0005	450	1	1	0	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	a0006	450	1	0	1	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF280A_chr22_22508736_22525270	0/0	a0001	542	216	67	24	106	6	13	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/1	a0002	542	188	21	47	84	10	25	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	a0003	542	8	0	0	0	0	8	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	a0004	542	6	0	0	6	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	a0005	542	5	0	0	5	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	a0006	542	3	2	1	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	a0007	124	1	0	0	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	a0008	542	1	0	0	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	a0009	542	1	0	0	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280B_chr22_22479421_22513742	0/1	a0001	543	290	75	56	112	14	32	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	a0002	543	64	12	8	32	2	10	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	a0003	543	5	5	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280C_chrX_130197707_130273899	1/1	a0001	737	269	60	43	121	11	32	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	a0002	698	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	a0003	192	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280D_chr15_56625176_56738509	0/1	a0001	979	245	67	52	92	5	28	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	1/0	a0002	979	134	18	19	79	5	12	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	a0003	979	2	0	0	0	0	2	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	a0004	979	2	1	1	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	a0005	979	1	1	0	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	a0006	979	1	0	0	1	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	a0007	979	1	1	0	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF281_chr1_200399951_200415036	1/1	a0001	895	432	94	80	196	18	42	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	a0002	895	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	a0003	895	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF282_chr7_149190546_149231238	1/1	a0001	671	225	96	49	57	10	11	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	a0002	671	19	0	6	0	2	11	copy fasta	ZNF282	chr7	149190546	149231238