JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF282_chr7_149190546_149231238	0/0	a0003	671	3	1	0	0	0	2	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	a0004	677	1	0	0	1	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	a0005	671	1	1	0	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	a0006	671	1	0	1	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF283_chr19_43822321_43857017	0/1	a0001	677	122	28	13	56	6	18	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	1/0	a0002	679	93	5	25	53	4	5	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0003	679	56	10	11	31	2	2	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0004	679	56	20	10	20	2	4	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0005	679	49	15	13	14	1	6	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0006	677	12	12	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0007	677	3	2	1	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0008	679	1	0	0	0	1	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0009	679	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0010	679	1	0	1	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0011	679	1	0	0	0	0	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	a0012	677	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF284_chr19_44067159_44094613	0/0	a0001	593	166	58	34	63	3	8	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/1	a0002	592	152	23	22	77	9	20	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	1/0	a0003	593	116	15	19	65	5	11	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0004	592	5	0	1	2	0	2	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0005	593	4	3	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0006	593	2	0	0	2	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0007	593	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0008	593	1	0	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0009	593	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0010	593	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0011	592	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0012	592	1	0	0	0	1	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	a0013	592	1	0	0	0	0	1	copy fasta	ZNF284	chr19	44067159	44094613
ZNF285_chr19_44377298_44406608	0/1	a0001	590	164	24	19	98	6	16	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	1/0	a0002	590	114	13	33	36	10	21	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0003	590	112	16	21	70	2	3	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0004	590	15	5	4	1	0	5	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0005	590	11	11	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0006	590	9	6	3	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0007	590	7	7	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0008	590	3	3	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0009	590	3	0	0	3	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0010	590	3	3	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0011	590	2	2	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0012	590	2	2	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0013	590	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0014	590	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0015	590	1	0	0	0	0	1	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0016	590	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0017	590	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0018	590	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0019	590	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0020	590	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	a0021	590	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608