JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF317_chr19_9135397_9168413	0/0	a0004	595	3	0	3	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF318_chr6_43331070_43374647	0/1	a0001	2279	230	47	38	110	7	27	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0002	2279	57	30	15	9	2	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	1/0	a0003	2279	9	8	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0004	2279	3	2	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0005	2279	3	2	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0006	2279	2	2	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0007	2279	2	0	0	2	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0008	2279	2	0	0	2	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0009	2279	1	0	0	0	1	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0010	2279	1	0	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0011	2279	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0012	2279	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0013	2279	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0014	2279	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0015	2279	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0016	2279	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0017	2279	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0018	2279	1	0	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0019	2279	1	0	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0020	2279	1	0	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0021	2279	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	a0022	2279	1	0	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF319_chr16_57989676_58005672	1/1	a0001	582	395	96	64	177	14	42	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	a0002	582	7	0	0	7	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF320_chr19_52871180_52902635	1/1	a0001	509	435	99	76	198	15	45	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	a0002	509	1	0	0	1	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	a0003	509	1	0	0	1	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	a0004	509	1	1	0	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	a0005	509	1	0	0	0	1	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	a0006	509	1	0	0	0	0	1	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	a0007	509	1	0	1	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	a0008	509	1	0	1	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF322_chr6_26629383_26664746	0/0	a0001	402	354	87	50	169	13	35	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	a0002	402	8	7	1	0	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	a0003	402	6	0	5	0	1	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	a0004	402	1	0	0	1	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	a0005	402	1	0	0	0	0	1	copy fasta	ZNF322	chr6	26629383	26664746
ZNF324B_chr19_58446622_58462833	1/1	a0001	544	426	92	79	189	17	47	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	a0002	544	5	0	0	5	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	a0003	544	2	0	0	0	1	1	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	a0004	544	2	0	1	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	a0005	544	2	2	0	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	a0006	544	1	0	0	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324_chr19_58462080_58480436	1/1	a0001	553	425	87	78	198	18	42	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	a0002	553	3	0	2	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	a0003	553	3	3	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	a0004	553	2	2	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	a0005	553	2	1	1	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	a0006	553	1	0	1	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436