JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF334_chr20_46494630_46518559	0/0	a0010	423	1	0	0	0	0	1	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0011	680	1	1	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0012	680	1	0	0	1	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0013	680	1	0	1	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	a0014	680	1	0	0	1	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF335_chr20_45943660_45977203	0/1	a0001	1342	259	77	52	93	9	27	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	1/0	a0002	1342	136	6	22	98	2	7	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0003	1342	3	3	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0004	1342	3	1	0	0	0	2	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0005	1342	2	0	0	0	0	2	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0006	1342	2	2	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0007	1342	2	0	0	0	0	2	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0008	1342	2	0	0	0	0	2	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0009	1342	2	0	0	2	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0010	1342	2	0	0	2	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0011	1342	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0012	1342	1	0	0	0	0	1	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0013	1342	1	0	0	0	0	1	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0014	1342	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0015	1342	1	0	1	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0016	1342	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0017	1342	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0018	1342	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0019	1342	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0020	1342	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0021	1342	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0022	1342	1	0	1	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0023	1342	1	0	0	0	1	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0024	1342	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	a0025	1342	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF337_chr20_25668195_25701853	1/1	a0001	751	279	46	59	127	13	32	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	a0002	751	78	44	7	23	1	3	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	a0003	751	2	0	0	2	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	a0004	751	1	0	1	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	a0005	751	1	1	0	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	a0006	751	1	1	0	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	a0007	751	1	0	0	1	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	a0008	751	1	0	1	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	a0009	751	1	0	0	0	0	1	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	a0010	751	1	0	0	1	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF33A_chr10_38005675_38065087	0/0	a0001	811	177	40	33	92	8	4	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	1/1	a0002	811	157	35	33	66	2	19	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	a0003	811	15	0	0	11	0	4	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	a0004	811	10	8	2	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	a0005	811	8	1	5	0	2	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	a0006	811	2	0	0	0	0	2	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	a0007	811	2	0	0	0	0	2	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	a0008	811	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	a0009	811	1	0	0	1	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	a0010	811	1	0	1	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087