Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACAN_chr15_88798436_88880353	0/0	a0106	2568	1	0	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0107	2511	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0108	2473	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0109	2587	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0110	2587	1	0	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0111	2625	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0112	2625	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0113	2606	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0114	2606	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0115	2473	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0116	2606	1	0	0	0	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0117	2606	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0118	2492	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0119	2492	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0120	2492	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0121	2568	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0122	2549	1	0	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0123	2549	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0124	2549	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0125	2568	1	0	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0126	2568	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0127	2549	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0128	2549	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0129	2568	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0130	2568	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0131	2568	1	0	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0132	2454	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0133	2530	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0134	2530	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0135	2587	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0136	2511	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0137	2454	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0138	2530	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0139	2530	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0140	2169	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0141	2568	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0142	2492	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0143	2416	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0144	2530	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAP1_chr17_7331529_7356477	1/1	a0001	740	423	89	81	193	14	44	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	a0002	740	9	1	1	2	1	4	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	a0003	740	5	5	0	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	a0004	740	2	0	0	2	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	a0005	740	2	0	0	2	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	a0006	740	1	1	0	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	a0007	740	1	0	1	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	a0008	740	1	0	0	0	1	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	a0009	740	1	0	0	1	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	a0010	740	1	0	1	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP2_chr3_195269745_195448020	1/1	a0001	778	323	84	60	127	10	40	copy fasta	ACAP2	chr3	195269745	195448020