JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C12orf50_chr12_87975035_88034401	0/0	a0009	414	1	1	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	a0010	414	1	0	0	1	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf54_chr12_48477498_48501524	1/0	a0001	127	332	81	58	155	11	26	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/1	a0002	127	85	1	19	43	7	14	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	a0003	127	11	1	6	0	0	4	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	a0004	127	5	5	0	0	0	0	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	a0005	127	2	0	0	2	0	0	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	a0006	127	1	0	1	0	0	0	copy fasta	C12orf54	chr12	48477498	48501524
C12orf56_chr12_64259762_64395758	1/1	a0001	622	155	23	34	75	9	12	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	a0002	623	83	47	11	15	2	8	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	a0003	623	54	1	10	35	1	7	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	a0004	622	16	9	1	3	0	3	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	a0005	623	1	1	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	a0006	623	1	0	0	1	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	a0007	268	1	1	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	a0008	398	1	0	0	1	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf57_chr12_6939022_6951002	1/0	a0001	126	424	91	74	194	16	48	copy fasta	C12orf57	chr12	6939022	6951002
C12orf57_chr12_6939022_6951002	0/0	a0002	126	3	3	0	0	0	0	copy fasta	C12orf57	chr12	6939022	6951002
C12orf60_chr12_14798670_14829415	1/1	a0001	245	303	64	69	116	16	36	copy fasta	C12orf60	chr12	14798670	14829415
C12orf60_chr12_14798670_14829415	0/0	a0002	196	68	27	8	21	2	10	copy fasta	C12orf60	chr12	14798670	14829415
C12orf60_chr12_14798670_14829415	0/0	a0003	245	11	0	0	11	0	0	copy fasta	C12orf60	chr12	14798670	14829415
C12orf60_chr12_14798670_14829415	0/0	a0004	245	3	0	0	3	0	0	copy fasta	C12orf60	chr12	14798670	14829415
C12orf60_chr12_14798670_14829415	0/0	a0005	63	1	1	0	0	0	0	copy fasta	C12orf60	chr12	14798670	14829415
C12orf60_chr12_14798670_14829415	0/0	a0006	245	1	0	1	0	0	0	copy fasta	C12orf60	chr12	14798670	14829415
C12orf60_chr12_14798670_14829415	0/0	a0007	245	1	0	0	1	0	0	copy fasta	C12orf60	chr12	14798670	14829415
C12orf71_chr12_27076057_27087578	1/1	a0001	269	287	66	38	148	4	29	copy fasta	C12orf71	chr12	27076057	27087578
C12orf71_chr12_27076057_27087578	0/0	a0002	269	65	19	8	30	3	5	copy fasta	C12orf71	chr12	27076057	27087578
C12orf71_chr12_27076057_27087578	0/0	a0003	269	62	4	29	13	7	9	copy fasta	C12orf71	chr12	27076057	27087578
C12orf71_chr12_27076057_27087578	0/0	a0004	269	3	3	0	0	0	0	copy fasta	C12orf71	chr12	27076057	27087578
C12orf71_chr12_27076057_27087578	0/0	a0005	269	2	2	0	0	0	0	copy fasta	C12orf71	chr12	27076057	27087578
C12orf71_chr12_27076057_27087578	0/0	a0006	269	1	1	0	0	0	0	copy fasta	C12orf71	chr12	27076057	27087578
C12orf71_chr12_27076057_27087578	0/0	a0007	269	1	1	0	0	0	0	copy fasta	C12orf71	chr12	27076057	27087578
C12orf71_chr12_27076057_27087578	0/0	a0008	269	1	0	1	0	0	0	copy fasta	C12orf71	chr12	27076057	27087578
C12orf71_chr12_27076057_27087578	0/0	a0009	269	1	0	0	1	0	0	copy fasta	C12orf71	chr12	27076057	27087578
C12orf71_chr12_27076057_27087578	0/0	a0010	269	1	0	0	0	0	1	copy fasta	C12orf71	chr12	27076057	27087578
C12orf75_chr12_105325691_105376518	1/1	a0001	63	407	88	73	182	18	44	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	a0002	63	1	0	1	0	0	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf76_chr12_110036177_110053522	1/1	a0001	72	238	27	56	112	11	30	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	a0002	72	117	64	16	30	1	6	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	a0003	72	1	1	0	0	0	0	copy fasta	C12orf76	chr12	110036177	110053522
C13orf42_chr13_51077119_51116274	1/1	a0001	325	336	73	64	155	16	26	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	a0002	325	107	19	14	50	2	22	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	a0003	325	4	0	0	4	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	a0004	325	2	0	0	0	0	2	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	a0005	325	1	0	0	1	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	a0006	325	1	1	0	0	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	a0007	325	1	1	0	0	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf46_chr13_113948705_113979076	1/1	a0001	212	390	88	82	159	16	43	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	a0002	212	13	0	3	9	0	1	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	a0003	212	6	5	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076