JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF33A_chr10_38005675_38065087	0/0	a0011	811	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	a0012	811	1	0	0	0	0	1	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33B_chr10_42584109_42643570	0/1	a0001	778	247	26	42	138	15	25	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	1/0	a0002	778	103	38	24	26	0	14	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	a0003	778	21	18	3	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	a0004	778	5	5	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	a0005	778	1	0	0	0	0	1	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	a0006	778	1	0	0	1	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	a0007	778	1	1	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	a0008	778	1	0	0	0	1	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	a0009	806	1	0	0	1	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	a0010	778	1	0	1	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF341_chr20_33726996_33797269	1/1	a0001	854	302	69	57	120	16	38	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	a0002	854	22	21	1	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	a0003	854	3	0	0	3	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	a0004	854	1	0	0	0	0	1	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	a0005	854	1	1	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	a0006	854	1	0	0	1	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	a0007	854	1	0	0	0	0	1	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	a0008	854	1	1	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF343_chr20_2476817_2513915	1/1	a0001	599	380	81	59	179	16	43	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0002	599	15	13	2	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0003	599	3	0	0	3	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0004	599	3	0	3	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0005	599	2	2	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0006	599	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0007	599	1	0	0	0	0	1	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0008	599	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0009	627	1	0	1	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0010	599	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0011	599	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	a0012	599	1	0	1	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF345_chr19_36845876_36884575	1/0	a0001	488	353	91	72	139	10	40	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	a0002	488	20	0	0	20	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	a0003	276	1	0	1	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	a0004	488	1	1	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	a0005	488	1	0	0	1	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	a0006	488	1	0	1	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/1	a0007	488	1	0	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF346_chr5_177017696_177072985	1/1	a0001	294	350	86	66	148	12	36	copy fasta	ZNF346	chr5	177017696	177072985
ZNF347_chr19_53129935_53164053	0/1	a0001	839	216	31	41	108	7	28	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	1/0	a0002	839	137	53	30	39	5	9	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0003	839	3	0	0	3	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0004	839	3	3	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0005	839	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0006	839	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0007	350	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0008	839	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0009	839	1	0	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0010	839	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053