JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF347_chr19_53129935_53164053	0/0	a0011	839	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0012	839	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	a0013	839	1	0	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF34_chr8_144767224_144792317	1/1	a0001	539	317	91	67	112	14	31	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	a0002	538	90	1	13	72	2	2	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	a0003	539	5	5	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	a0004	539	1	1	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	a0005	539	1	0	0	0	0	1	copy fasta	ZNF34	chr8	144767224	144792317
ZNF350_chr19_51959340_51991840	0/0	a0000	0	2	0	0	2	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	1/1	a0001	532	240	59	47	98	7	27	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	a0002	532	66	8	5	36	5	12	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	a0003	532	30	24	5	1	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	a0004	532	9	0	5	0	2	2	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	a0005	532	8	0	0	8	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	a0006	532	2	2	0	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	a0007	532	2	2	0	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	a0008	532	1	0	0	0	0	1	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	a0009	532	1	1	0	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	a0010	532	1	0	0	1	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF354A_chr5_178706512_178735659	1/1	a0001	605	405	87	80	178	15	43	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	a0002	606	3	3	0	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	a0003	605	3	0	2	0	1	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	a0004	605	2	2	0	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	a0005	605	1	0	0	0	0	1	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354B_chr5_178854953_178890020	1/1	a0001	612	364	63	61	184	13	41	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	a0002	612	35	25	8	0	1	1	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	a0003	612	2	0	0	0	2	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	a0004	612	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	a0005	612	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	a0006	612	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	a0007	423	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	a0008	612	1	0	1	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354C_chr5_179055373_179088977	0/0	a0001	554	326	58	53	180	8	27	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	1/1	a0002	554	87	19	22	28	6	10	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	a0003	554	10	2	2	0	0	6	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	a0004	554	8	8	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	a0005	554	3	2	1	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	a0006	554	2	2	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	a0007	554	2	2	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	a0008	554	1	0	0	0	0	1	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	a0009	554	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF358_chr19_7511103_7526025	1/1	a0001	568	340	76	63	160	8	31	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	a0002	568	65	9	16	20	6	14	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	a0003	568	8	0	3	0	2	3	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	a0004	568	5	5	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	a0005	560	2	2	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	a0006	568	1	1	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	a0007	568	1	1	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	a0008	568	1	0	0	1	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	a0009	568	1	0	0	1	0	0	copy fasta	ZNF358	chr19	7511103	7526025